Output_id:  SelW.2.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434131|gb|JH378232.1|
-Program        genewise
-Query name     ref|NP_001108484.1| selenoprotein W, 1 [Canis lupus familiaris]
-Query range    1-87       length:87    coverage: 1.0
-Profile range  169-433    length:494   coverage: 0.54    sec_positions: [288, 291]
-Average sequence identity with profile: 0.2571   (ignoring gaps: 0.2906)
-State          kept

------- alignment -------
Query   MALAVRVVYU <---Intron---> GAUGYKSK <---Intron---> YLQLKKKLEDEFPGCLDI <---Intron---> CGEGTPQATGFFEVTV
        ||| |||||  <   1835bp   > |||||||| <    90bp    > |||||||||||||| ||| <   163bp    >  |||||||||||||||
Target  MALTVRVVYC                GAUGYKSK                YLQLKKKLEDEFPGRLDI                SGEGTPQATGFFEVTV
        agcagcggtt                ggtgtata                tcccaaatgggtcgccga                tgggaccgagttggag
        tctctgttag                gcggaaca                atataaataaatcggtat                cgagccaccgttatct
        gtcgcactt                tctaccgcg                ttgcgggaatgccccgcc                ccgatcgccgccaaga
                 *                  *                                                                       

Query   AGKLVHSKK <---Intron---> RGDGYVDTESKFLRLVAAIKTALAQG
        ||||/|||| <   102bp    > /||||||||||||/|||||| |||||
Target  AGKLIHSKK                KGDGYVDTESKFLKLVAAIKAALAQG
        ggatactaa                agggtggagaatcacgggaaggtgcg
        cgattacaa                agagatacagattattcctacctcag
        tgggtctgg                actctgcgacgtggggcccatcgtgc
                                                           
------- positions -------
Exon 1    3025481      3025509
Exon 2    3027345      3027369
Exon 3    3027460      3027513
Exon 4    3027677      3027751
Exon 5    3027854      3027931

--------- SECIS ---------
>SelW.2.selenocysteine.esecis:loosest.1 chromosome:gi|357434131|gb|JH378232.1| strand:+ positions:3028730-3028839 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:1020 distance_from_cds:798
CGUGUUCAGU GUGAAUU GGGACGUGCUAAU UUGAA GUCGUGCAGUAC AG AGACACAAAUGGUAUCUUGCCU UAUGUGCAGGUC UGAA ACAAAGC AAAUCC CUUUAAAAUA
...(((((.. .))))). ((((..((((... .(((( (.(.(((.((.. .. ..))(((.(.(((.....))). ).)))))).).) )))) ....))) )..))) ).........

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *