Output_id:  SelT.5.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434246|gb|JH378117.1|
-Program        genewise
-Query name     gi|143771645|ref|NP_001006557.3| selenoprotein T [Gallus gallus] gi|172045965|sp|Q5ZJN8.3|SELT_CHICK RecName: Full=Selenoprotein T_ Short=SelT_ Flags: Precursor
-Query range    12-158     length:199   coverage: 0.74
-Profile range  27-406     length:488   coverage: 0.78    sec_position: [282]
-Average sequence identity with profile: 0.3242   (ignoring gaps: 0.3807)
-State          kept

------- alignment -------
Query   LLLLAALA--GPGGSAEQGGVPAKKLRMAYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR <---I
        |||/|| |      ||  ||||/|/|/| |||||||||||| <  15238bp   > ||||||||||||||||||||||||||||||||||||| <   5
Target  LLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQIC                VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR      
        cccgggtgggcaggtgacgggcaaataactgagcccatcat                gttgtacgtggtacgaacctcgacagggatccccata      
        ttttccccttggacccatggtcgagtataaccgcttatatg                tcggaggttaaatgttgagacatgtagaaatcactag      
        tcgggggggcgcgcgccgctgccgaagggccggggcgcgt                ttcattggatggcggttcggcacccaaagtcctaaat       
                                                                   *                                        

Query   ntron---> HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEITLN
        41bp    > |||||||||||||||||||||||||||||||||||||||||| <   2176bp   > |||||||||||||||||||||||||||||
Target            HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                VYACMMVFFLSNMIENQCMSTGAFEITLN
                  cagttctgtacgtagtaaggagctgttgacgcaatctgcgaa                gtgtaagtttaaaagactataggtgaata
                  atccttcttattttgttttgaactcttgtaccgtgaggaaaa                tacgttttttgattaaagtccgctatcta
                 acaatcgaccaaaaacaattcgttttctcgattccgggcaatg                ctatggtccgccgtgcgtgaatatgatat
                                                                                                         
------- positions -------
Exon 1    24635660     24635781
Exon 2    24620311     24620421
Exon 3    24619643     24619769
Exon 4    24617380     24617466

--------- SECIS ---------
None found

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
GGTAGGTTCTGA
 G  R  F  *