Output_id:  SelS.1.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434129|gb|JH378234.1|
-Program        genewise
-Query name     gi|168693663|ref|NP_001108229.1| selenoprotein S [Canis lupus familiaris]
-Query range    1-190      length:190   coverage: 1.0
-Profile range  1-265      length:266   coverage: 1.0    sec_position: [264]
-Average sequence identity with profile: 0.5086   (ignoring gaps: 0.56)
-State          kept

------- alignment -------
Query   MERDGQQLSARPALETEGLRYLHVTV <---Intron---> GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRQLDRAEAAVE <---Intron--
        |||/ / |||||||||||||/||||| <   650bp    > |||||||||||||||/|||||||||| ||||||||||||| |||| <   2209bp  
Target  MEREEEPLSARPALETEGLRFLHVTV                GSLLATYGWYIVFSCLLLYVVFQKLSARLRALRQRQLDRAAAAVE             
        agcgggcctgccgcgaggcctccgag                gtccgatgttagtatccctggtcactgccagtacaccgagggggg             
        tagaaactccgcctacagtgttatc                tgcttccaggatttggtttatttaatccgtgctgagatagcccct              
        gggaggtgcgggcggcgggccaccc                gccggcctcgccccccccccgccggtccgaacgggaggcatgttg              
                                                                                                            

Query   -> PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ <---Intron---> LEEQKRRQKIEMWDSMQEGKSYKGNARKHP <---Intron---> 
         > |||||||||||||||||||||||||||||||||/| <   721bp    > |||/||||||||||||||||||||||/|   <    97bp    > 
Target     PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQ                LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ                
           cggggaccggtgggctaacggcagcggacagacac                cgggacacaagatgaacggaatagagaacc                
          acatttagaactcccgtataaatacataaaaaataa                taaaaggaatatgagtaagagaagacaaca                
          atttttaaaataattagagaaaattatagtagaaag                taaaagaggtaggccgaaaatcaataggtg                
                                                                                                            

Query   EEDSPGPSTSSVLPKRKPDRKPLRGGG <---Intron---> YNPLSGEGGGACSWRPGRRGPSSGGUG
         |||||||||||/|||| ||||||||| <   1565bp   > |||||||||| ||||||||||||||||
Target  GEDSPGPSTSSVIPKRKSDRKPLRGGG                YNPLSGEGGGTCSWRPGRRGPSSGGUG
        gggacgctattgacacatgaactcggg                tacttgggggatttacgcagcttggtg
        gaagcgcccccttcagacagactggg                gaactcgagggcgcggcggggcccgggg
        gacttgtctatccgagagcagtggat                ttctgttaatacccgatacacggtcaac
                                                                            * 
------- positions -------
Exon 1    3161557      3161632
Exon 2    3160772      3160906
Exon 3    3158456      3158562
Exon 4    3157645      3157734
Exon 5    3157469      3157547
Exon 6    3155821      3155903

--------- SECIS ---------
>SelS.1.selenocysteine.esecis:str.1 chromosome:gi|357434129|gb|JH378234.1| strand:- positions:3155392-3155496 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:327 distance_from_cds:324
CCAGGACAGU CUCUGUGA UGGGUUGCGUUGA AUGAU GUCUUCCUUAGC AA UGGUGAGCCCACCA GUGAGGAUUAC UGAU GCAGACAG UUGUCGGG GUUUGUUUCU
...((((((. (((((.(. ((..((((..... .(((( ((..((((((.. .. (((((....))))) .))))))..)) )))) )))).)). )...)))) ).))))))..

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *