Output_id:  SelR.4.cysteine
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434240|gb|JH378123.1|
-Program        genewise
-Query name     gi|119892367|ref|XP_875267.2| PREDICTED: similar to methionine sulfoxide reductase B3 isoform 4 [Bos taurus]
-Query range    1-191      length:191   coverage: 1.0
-Profile range  1-792      length:792   coverage: 1.0    sec_position: [448]
-Average sequence identity with profile: 0.328   (ignoring gaps: 0.4675)
-State          kept

------- alignment -------
Query   MSPRRTLPRPFLLCLCLSLCLAAAAARGAVQSG <---Intron---> SCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTES <---Intron--->
        ||||||||||  ||||| |||| ||| |/ ||| <  50511bp   > |||||||||||||||||||||||||||||||||||| <   1598bp   >
Target  MSPRRTLPRPLSLCLCLCLCLAGAAALGSAQSG                SCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTES               
        aacccaccccctctctctctcgggggcgagctg                ttagaaataggttccgcaaccaccctcgacgagaga               
        tgcggctcgctctgtgtgtgtcgccctggcac                gcggaaaagatttcaaatgagtcctaaatcaaagcag               
        gcgggccgcccgtcccccccgcgcgtgatggc                gatgtagctggctcggaggggaacggctctggagca                
                                                                                                            

Query    AFEGEYTHHKDPGIYKCVVCGTPLFK <---Intron---> SETKFDSGSG <---Intron---> WPSFHDVINSDAITFTDDFSYGMHRVETSCS
         |||||||||||||||||||||||||| <  30902bp   > |||||||||| <  83391bp   > ||||||||/|/||||||||||||||||||||
Target   AFEGEYTHHKDPGIYKCVVCGTPLFK                SETKFDSGSG                WPSFHDVISSEAITFTDDFSYGMHRVETSCS
         gtgggtaccagcgatatggtgactta                tgaatgtgtg                tcttcggaatggaataggtttgacaggaatt
         ctagaacaaaacgtaagttggcctta                cacatacgc                ggcctaattgcactctcaatcagtagtacggc
        tccaaacatcattaatattttatagt                aaagatccta                tgtacctgcttgacacatctctggcggaacct
                                                                                                            

Query   Q <---Intron---> CGAHLGHIFDDGPRPTGKRYUINSASLSFSPAESSGA--QGDSAGGSPAPGDKTEL
        | <   8736bp   > |||||||||||||||||||| ||||/|||/||/| ||  /| |   |||  || ||
Target  Q                CGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSGGAAAEGGSGVASPAQADKAEL
        c                tggccgcatgggcccagaattaatggtttacggaggggggggagggacgcggaggc
        a                ggcatgattaagcgccgagagtaccctctcccagggcccaggggtcgccacaacat
        g                tttctgcttttgttatgaaccctgtcatcatgtcttgccgactgcccacgacaagc
                                             *                                   
------- positions -------
Exon 1    8193634      8193730
Exon 2    8244242      8244350
Exon 3    8245949      8246026
Exon 4    8276929      8276957
Exon 5    8360349      8360446
Exon 6    8369183      8369350

--------- SECIS ---------
None found

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAG
 *