Output_id:  SelR.1.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434229|gb|JH378134.1|
-Program        genewise
-Query name     gi|215794531|pdb|2KAO|A Chain A, Structure Of Reduced Mouse Methionine Sulfoxide Reductase B1 (Sec95cys Mutant)
-Query range    1-116      length:124   coverage: 0.94
-Profile range  1-546      length:792   coverage: 0.69    sec_position: [448]
-Average sequence identity with profile: 0.2554   (ignoring gaps: 0.3784)
-State          kept

------- alignment -------
Query   MSFCSFFGGEVFQNHFEPG <---Intron---> VYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALK <---Intron---> 
        ||||||||||||||||||| <   2178bp   > /|||||| |||||| ||||||||||||||||| ||| | || || |||| <   377bp    > 
Target  MSFCSFFGGEVFQNHFEPG                IYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK                
        atttattggggtcactgcg                atgtgatgtgcttactatgcttctcgtagaacggaggaccgcactggta                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcaaagcacta                
        ggcccccgcgtcgtctgg                ctcttcgtctggccccagcacacagggctgctccccgcgtggctatacgg                
                                                                                                            

Query   VSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKG <---Intron---> KEAAASQGH
        |||||||||||||||||||| |||||||||||||||||| <   2627bp   > || /|||||
Target  VSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKG                KETSASQGH
        gttgatgagtgcgtcaggcacgctcttataatcatgcag                agatgtcgc
        tcggaggagtgaattaagcacgacgtgttggctattca                gaaccccaga
        gctcgtccggctgcgccccggggcacaactcgggtcta                caattgcggc
                                  *                                     
------- positions -------
Exon 1    16036669     16036723
Exon 2    16038902     16039050
Exon 3    16039428     16039542
Exon 4    16042170     16042198

--------- SECIS ---------
>SelR.1.selenocysteine.esecis:str.1 chromosome:gi|357434229|gb|JH378134.1| strand:+ positions:16042662-16042766 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:526 distance_from_cds:463
CCCUGCCACC CACCCCAG CCCCAGUCACUGC AUGAU CCACUCUGGUC AA ACCCUUCCAGGCC AGCCAGGGUGG GGAU GGUCCGUGAC CUGCUGGG AAGGCAGGCC
.((((((... ...((((( (....(((((.(( .(((( ((((((((((. .. ..(((...))).. .)))))))))) )))) .))..))))) ..)))))) ..))))))..

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAG
 *