Output_id:  SelK.8.pseudo
----------  -------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434209|gb|JH378154.1|
-Program        genewise
-Query name     gi|87047634|gb|ABD18450.1| MODIFIED selenoprotein K [Sus scrofa]
-Query range    2-94       length:94    coverage: 0.99
-Profile range  6-152      length:153   coverage: 0.96    sec_position: [150]
-Average sequence identity with profile: 0.3335   (ignoring gaps: 0.4066)
-State          kept

------- alignment -------
Query   VYISNGQALDSRSQSPWRLSFITDFFWGIAEFV ! FRAME ! VLFFRTLLQQDVKKRRGYGGSSDSRYDDGRGPP ! FRAME ! GNPPRRMGRINH
        ||/ ||| ||| ||||||||/|||||| ||||| ! SHIFT !  |  /||||/||||   || |||||||| |||| ! SHIFT !       ||||||
Target  VYLPNGQVLDSWSQSPWRLSWITDFFWRIAEFV           -LLLKTLLQRDVKKSSSYGNSSDSRYDDERGPP           ------MGRINH
        gtccagcgtgatactctatttaagtttaaggtg    4bp    -tctaaccccggaaaaatgattgtatgggagcc    2bp    ------agaaac
        tatcagattagggaccggtcgtcattggtcatt           -tttacttagataagggagaccacgaaaaggcc           ------tggtaa
        tccataaggccgtgtagaatgagtccgaatgtg           -gtgatgtgatgaaccctacattcatttaagaa           ------gtactt
                                                                                                            

Query   LRGPNPPPMAGGUGR
           |/|| ||||| |
Target  WHDPSPPLMAGGUER
        tcgcacccagggtga
        gaacgccttcgggag
        gtcctttagttaaag
                    *  
------- positions -------
Exon 1    11256972     11257070
Exon 2    11256872     11256967
Exon 3    11256807     11256869

--------- SECIS ---------
>SelK.8.pseudo.esecis:str.1 chromosome:gi|357434209|gb|JH378154.1| strand:- positions:11256590-11256693 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:119 distance_from_cds:113
AAUAAGGACC GCUCUGUG UCCUCACAAAUGA AUGAG GUCAUGCUGGG AA UUCCCUCUGCAGGGA ACUGGCUGAC UGAC AUGCAGUUC CAUAAAU GCACAUGUCU
....(((((( .....).) ))))......... .(((( ((((.(((((. .. ((((((....))))) )))))))))) )))) .((((.... ......) ))).......

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
AAAATGTCTGTTCCAAGAAGCAGACAACCGGACATGTGCATTCACAGCAGAAGGAAACCATCAATAAGTGGAGGGCTGGCCATGCTGGAGCAGTAG
 K  M  S  V  P  R  S  R  Q  P  D  M  C  I  H  S  R  R  K  P  S  I  S  G  G  L  A  M  L  E  Q  *