Output_id:  SelK.5.pseudo
----------  -------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434203|gb|JH378160.1|
-Program        exonerate
-Query name     gi|87047634|gb|ABD18450.1| MODIFIED selenoprotein K [Sus scrofa]
-Query range    1-94       length:94    coverage: 1.0
-Profile range  1-152      length:153   coverage: 0.99    sec_position: [150]
-Average sequence identity with profile: 0.4119   (ignoring gaps: 0.468)
-State          kept

------- alignment -------
Query   MVYISNGQALDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDV ! FRAME ! KKRRGYGGSSDSRYDDGRGPPGNPPRRMGRINHLRGPNPPPMA
        | ||| || ||||/||||||| |||| |||||||||||/|| |||| ! SHIFT ! |||| || |||||||||| |||/||||||||||||||/|||||
Target  MAYISKGQVLDSRNQSPWRLSLITDFSWGIAEFVVLFFKTLFQQDV           KKRRSYGNSSDSRYDDGREPPGSPPRRMGRINHLRGPSPPPMA
        agtatagcgtgacactctatttaagtttgaggtggtttaactccgg    1bp    aaaaatgattgtatgggagccgacccaagaaacccgcacccag
        tcatcagattaggaaccggtcttcatcggtcattttttacttaaat           aagggagaccacgaaaggaccggccggtggtaatggcgccctc
        gtccggagggccgtgtagaatgaatccgaatgtgtatcacgtgatg           aaaactacagtcacttaagaaactcaagtacttgtcctttagt
                                                                                                            

Query   GGUGR
        || ||
Target  GGGGR
        gggga
        ggggg
        taaag
          *  
------- positions -------
Exon 1    11095980     11096117
Exon 2    11096119     11096262

--------- SECIS ---------
>SelK.5.pseudo.esecis:str.1 chromosome:gi|357434203|gb|JH378160.1| strand:+ positions:11096375-11096479 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:112
AACAAGGACU GUUCUGUG UCCUCACAGAUGA AUGAG GUCAUGCCAGG AA UUCCCUCUGCAGGGA ACUGGCCUGAC UGAC AUGCAGUU CCAUAAAU GCACAUGUUU
.....((((( (((((((( ....))))))..( .(((( ((((.(((((. .. ((((((....))))) )))))).)))) )))) .))))))) )....... ..........

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *