Output_id:  SelK.2.pseudo
----------  -------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (+) gi|357434194|gb|JH378169.1|
-Program        genewise
-Query name     gi|87047634|gb|ABD18450.1| MODIFIED selenoprotein K [Sus scrofa]
-Query range    1-94       length:94    coverage: 1.0
-Profile range  1-152      length:153   coverage: 0.99    sec_position: [150]
-Average sequence identity with profile: 0.3697   (ignoring gaps: 0.4272)
-State          kept

------- alignment -------
Query   MVYISNGQALDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRRGYGGSSDSRYDDGRGPPGNPPRRMGRINHLRGPNPPPMAGGUGR
        |||| ||| |||/| |||||| ||||||||  |/||||/|   /  / || || | ||| |||||| || |/|||||/|| ||/|||/| ||||
Target  MVYILNGQVLDSQS*SPWRLSLITDFFWGIG*FMVLFFKTASAR-YENRRSYGNSPDSR*DDGRGPLGNLPQRMGRISHLCGPSPPPVASGUGR
        agtatagcgtgacattctatttaagtttgagttagtttaagtga-tgaaaatgatcgtatgggagccgacccaagaaacctgcacccggagtga
        ttattagattagagaccggtcttcattggtgattttttaccccg-aaagggagaccacgaaagggctgatcagtggtgatggcgccctcggggg
        gtccgtaaggccgtgtagaatgaatccgaatgtgtgtcattaaa-tacaactacattcggtttagagactcaagtacttgtcctttagttaaag
                      X                X                           X                               *  
------- positions -------
Exon 1    5319374      5319652

--------- SECIS ---------
>SelK.2.pseudo.esecis:str.1 chromosome:gi|357434194|gb|JH378169.1| strand:+ positions:5319745-5319844 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:98 distance_from_cds:92
AAAUAAGGAC UGCUGUGU CCUCACAGAUGG AUGAG GUCAUGCUGGG AA CUCCCUCUGCAGGAA ACUGGCUGAC UGAC AUACA GUUCCAUA AAUCACACAU
......(((( (((((((. ...)))))...( .(((( ((((.(((((. .. .(((.......))). .))))))))) )))) .).)) )))).... ..........

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
CAAAAAACTGGACATGCGCATTCATAG
 Q  K  T  G  H  A  H  S  *