Output_id:  SelI.1.selenocysteine
----------  ---------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434111|gb|JH378252.1|
-Program        genewise
-Query name     gi|207113144|ref|NP_001129035.1| selenoprotein I [Macaca mulatta]
-Query range    1-397      length:397   coverage: 1.0
-Profile range  1-411      length:411   coverage: 1.0    sec_position: [395]
-Average sequence identity with profile: 0.8297   (ignoring gaps: 0.8648)
-State          kept

------- alignment -------
Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  12556bp   > ||||||||||||||||||||||| <   421bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYVMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctctgaccttaaaga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gtccacgcggggtcttgcg                cttgcctattgtggtatgctaag                atttggtctgatttctggcacttaag
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFVAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   2189bp   > ||||||||||||||||||||||||| <   3076bp   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttca                agtcgtgtcgtgtggcccccaccta                ttacagatgactcctcaggttcccgttgattct
                                                                                                            

Query   VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1324bp   > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ggagttatgagtaggagtgctccctggttttactctgataagactcctgtgaacg                aattgtagagggggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tatgtcctaaaattcttttttcgagatgttccgctgagtcagttcgagatctcgg                ttttccagtgtgaagcgtatcgttcatac
                                                                                                            

Query   LFTSMIIG <---Intron---> CALCVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAVVPLFSPCLLFILSTAWILWSPSDILELH
        |||/|||| <   8413bp   > |||||||||||||||| <   1407bp   > |||||||||||||||||| |||||||||||||||||||||||/|
Target  LFTTMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHNSVYEAVVPFFSPCLLFILSTAWILWSPSDILEIH
        ctaaaaag                tgttgaccaattatta                ataaaatacatgtggggctttcttctattagtacttctgatgac
        ttccttt                ggctgtctctgttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattata
        actagtt                ctaatgttagtaactc                actattcgactactatgtccttacggctgtacgctgatattagat
                                                                                                            

Query   PRVFYFMVGTAFANST <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV <---In
        ||/||||||||||| | <   1236bp   > ||||||||||||||||||||||||||||||||||/||/|||/||||||||||||||||||| <   24
Target  PRIFYFMVGTAFANIT                CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHYGVRV       
        caatttaggagtgaaa                tccagtcaaaactcatatccgccttggtggatggtttagaaactataagtacgcactggcg       
        cgttatttgcctcatc                gatttgatggcggcctagtttcttttttttatgtccatagtttactccctctcataagtgt       
        taacctgtaactctca                tggttcagttcgtatgtgggttccgtcagacaagctctgctcataaattctgcccttaaag       
                                                                                                            

Query   tron---> VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
        22bp   > ||||||||||||||||||||||||||||||||
Target           VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatggatatactctgacacagtgtaaaatgt
                 agggccttgtcccaggaacataaagaagttcg
                                      *          
------- positions -------
Exon 1    4229677      4229733
Exon 2    4217052      4217120
Exon 3    4216522      4216630
Exon 4    4214258      4214332
Exon 5    4210919      4211181
Exon 6    4209486      4209594
Exon 7    4201024      4201072
Exon 8    4199436      4199616
Exon 9    4198017      4198199
Exon 10   4195499      4195594

--------- SECIS ---------
>SelI.1.selenocysteine.esecis:def.1 chromosome:gi|357434111|gb|JH378252.1| strand:- positions:4194118-4194216 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:1312 distance_from_cds:1282
UUUCACUGAA UGAAGUUU GUGCUUUA AUGAA GAGUGUAUCUU AA ACCCCUUUUUUUUGGA CAGGUUGCACUU GGAU AAAAU AGGCACCA CUGUGUUGAU
........(( ((.(((.. ((((((.. .(((( (((((((.((( .. .((..........)). .))).))))))) )))) ..... )))))).) )).))))...

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAA
 *