Output_id:  GPx.5.selenocysteine
----------  --------------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434248|gb|JH378115.1|
-Program        genewise
-Query name     gi|172046601|sp|Q9JHC0.3|GPX2_MOUSE RecName: Full=Glutathione peroxidase 2_ AltName: Full=GSHPx-2_ Short=GPx-2_ AltName: Full=Glutathione peroxidase-gastrointestinal_ AltName: Full=GSHPx-GI gi|5305216|gb|AAD41533.1|U62658_1 glutathione peroxidase [Mus mu
-Query range    1-190      length:190   coverage: 1.0
-Profile range  1-447      length:447   coverage: 1.0    sec_position: [193]
-Average sequence identity with profile: 0.3705   (ignoring gaps: 0.4376)
-State          kept

------- alignment -------
Query   MAYIAKSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        ||/||||||||||| |||||/|||||||||||||||||||||||||/ |||||||||||||||||||||||||| <   3655bp   > ||||||||||
Target  MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctccccggcgtctactgcc                gatcaggaca
        tcttcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gcctcgccccctcccgtgggatctacgcgcggtgtgtggacaccgcccgccggacctcgcggctcctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKR
        |||||||||||||||/| |||/|||||||||||||||||||||||||||||||| |||||||||||/||||||||||||||||||||/| ||/|||||||
Target  SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTISIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctgggtatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggaacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctgtacatag
        tcgtcctgtacgcccctcaatggtggcgttccctggcgccctttcctccgctcgcctgccgccatgcgctggccagggagccaccccccaccccgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ctatca
              
------- positions -------
Exon 1    22963047     22963268
Exon 2    22959044     22959391

--------- SECIS ---------
>GPx.5.selenocysteine.esecis:str.1 chromosome:gi|357434248|gb|JH378115.1| strand:- positions:22958752-22958848 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:645 distance_from_cds:195
AAGGCUUGGG UAAGCUCU GGGCCUUCACAGA AUGAU GGCACCGUCCU AA ACCUUCA UGGGUGGUGUC UGAG AGGCGUGA AGGGCCUG GAGCCACCCU
.......((( (..((((( ((((((((((... .(((( (((((((.((( .. ....... .)))))))))) )))) ....)))) ).)))))) )))).)))).

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
TAG
 *