Output_id:  GPx.20.cysteine
----------  ---------------
-Species        Saimiri boliviensis                          -Taxid 27679
-Target         /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa
-Chromosome (-) gi|357434034|gb|JH378329.1|
-Program        exonerate
-Query name     gi|116667974|pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
-Query range    2-215      length:215   coverage: 1.0
-Profile range  2-447      length:447   coverage: 1.0    sec_position: [193]
-Average sequence identity with profile: 0.3737   (ignoring gaps: 0.4495)
-State          kept

------- alignment -------
Query   HHHHHHSSG <---Intron---> VDLGTENLYFQSMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYUGLTAQYPE <---Intr
        ||||||    <  93390bp   >           /  /||||/|/|||||||||| ||| ||| ||/|||||/|||||||| |||||||| <   2035
Target  HHHHHHHHD                ----------KIFQMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGLTAQYPE         
        ccccccccg                ----------aatcagtcagcagaatgtggaacaaagtgctactggacgctgaggattgcagctcg         
        aaaaaaaaa                ----------attatagagaaagctaaaactttaaaaatctagatgaattttatccaggtccaac          
        cccccccct                ----------accggttcataaccctccaccggtggattccggtgcgccctccgcccttgagatt          
                                                                                          *                 

Query   on---> LNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK <---Intron---> YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLK <---
        bp   > ||||||||||/|||||||||||||||||||||||||||| <   417bp    > ||||||||||/|||||||||||||||||||||| <   
Target         LNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLK     
               cagccggcactgcggtgtctactgacgcggaagaccgca                tgccgggtgcatcctgagggaggagcagtatta     
              atactaaatactgttttgtcgaatgaaacgaaaattcgta                atgcgggttcatattaagatagaaaaattgtta     
              agtacgggggcttatggctcccgtagaaaatcggtttgc                gtctagaatactcgttgaatgttaaagaccccgg     
                                                                                                            

Query   Intron---> HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKT
        1556bp   > |||||||||||||||||||||||||||||||||||||||||||||||/|||| || || ||||||/|
Target             HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHQATVSLVKADIEAYLKQFRT
                   cttccctgatgatatattgcgagcgactatgatcggcggacgacttccgagatgaggaggttactaa
                   acgcaccattgctactcgactataatggataatttgcagtcttggcaacctgttacatacataatgc
                   cctttctgtgcacatacgctcactcctgctagcggtctactcgcgccgcaccacgaccgccggacac
                                                                                      
------- positions -------
Exon 1    203226       203252
Exon 2    109670       109835
Exon 3    107517       107634
Exon 4    107000       107099
Exon 5    105243       105443

--------- SECIS ---------
>GPx.20.cysteine.esecis:loosest.1 chromosome:gi|357434034|gb|JH378329.1| strand:- positions:103816-103913 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:1329
AUCUGAGAAA GAUGAUG CUAAGAAGAGAUA UUGAA GCUGAACUAUUCA CC GUCUGGUUGAUGA UGAGGAGAUGGC UGAA GCA CACAUG AGCAGUGGCA
((((.....) ))).... ((......))... .(((( ((((..((.(((( .. (((.....))).. )))).)).)))) )))) ((. (((... ....))))).
>GPx.20.cysteine.esecis:loosest.2 chromosome:gi|357434034|gb|JH378329.1| strand:- positions:103710-103809 species:"Saimiri boliviensis" target:/cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.fa distance_from_sec_uga:None distance_from_cds:1433
GCAGUGUGGU UGUCAAA ACUUUUGCCAAAC UUGAA CUGGUGUGUU AA AUCGGAGGAAGGG UAUGCACCAG CAGAC AUGAAGU AUUAGGUG CUUGAGAAAC
((((...((( (.....) ))).))))..... .(((( (((((((((. .. .((.......)). .))))))))) .)))) ...(((( ((...))) ))).......

--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon: 
AAATAG
 K  *