genewise output
Score 885.97 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000035_1.0   35 AGQRDYDLLVVGGGSGGLACAKE                           
                     AGQRDYDLLV+GGGSGGLACAKE                           
                     AGQRDYDLLVIGGGSGGLACAKE          A:A[gct]         
gi|357434094|-200864 ggccgtgccgagggtggcgtgagGGTATGAA  Intron 1   CAGCT 
                     cgagaaattttgggcggtcgcaa <1-----[200794:19024-1>   
                     atggcttcggtcgatccgttcga                           


SPP00000035_1.0   59 AQLGRKVAVVDYVEPSPQ                          TRWGL 
                     AQLGRKVAVVDYVEPSP+                          TRWGL 
                     AQLGRKVAVVDYVEPSPR          G:G[ggc]        TRWGL 
gi|357434094|-190240 gccgaagggggtggctccGGTAGGCA  Intron 2   CAGGCactgc 
                     catggatcttaatacccg <1-----[190185:18940-1>  cgggt 
                     cggagggcggccgattca                          cggcc 


SPP00000035_1.0   83 GGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHD        
                     GGTCVNVGCIPKKLMHQAALLGGLI+DAP+YGWEVAQPVPHD        
                     GGTCVNVGCIPKKLMHQAALLGGLIRDAPHYGWEVAQPVPHD        
gi|357434094|-189382 ggatgaggtacaacaccggccggcacggcctgtgggccgccg        
                     ggcgtatggtcaattaaccttggttgaccaaggatcactcaa        
                     gcccccccctcggggcggagggcgcacccttcgggcgcggtc        


SPP00000035_1.0  125                           RKMAEAVQNHVKSLNWGHRVQLQ 
                                               RKMAEAVQNHVKSLNWGHRVQL  
                                W:W[tgg]       RKMAEAVQNHVKSLNWGHRVQLH 
gi|357434094|-189256 TGGTAAGGA  Intron 3   CAGGaaaggggcacgattatgccgccc 
                       <2-----[189254:18845-2> gatcactaaatactaggagtata 
                                               gggaattatcgacgcgcctcggc 


SPP00000035_1.0  149 D                          KVKYFNIKASFVDEHTVCGVAK 
                     D                          KVKYFN+KA FVDEHTV GVAK 
                     D           R:R[agg]       KVKYFNVKAGFVDEHTVRGVAK 
gi|357434094|-188382 gAGGTACTGA  Intron 4   CAGGagattagaggtgggcagcggga 
                     a  <2-----[188377:18616-2> ataatatacgttaaactggtca 
                     c                          acgctccatcttcgcatcttca 


SPP00000035_1.0  173 GGKE                       ILLSADHIIIATGGRPRYPTH  
                     GGKE                       ILLSADHI+IATGGRPRYP H  
                     GGKE                       ILLSADHIVIATGGRPRYPAH  
gi|357434094|-186100 ggagGTGAGCC  Intron 5   CAGacctggcagagaggccatcgc  
                     ggaa<0-----[186088:18559-0>tttccaatttccgggcgacca  
                     tgag                       tggatccccctcaggggccac  


SPP00000035_1.0  198                        IEGALEYGITSDDIFWLKESPGK    
                                            +EGALEYGITSDDIFWLKESPGK    
                                            VEGALEYGITSDDIFWLKESPGK    
gi|357434094|-185532 GTGAGTG  Intron 6   CAGggggtgtgaaaggattcagtcga    
                     <0-----[185532:18104-0>tagctaagtcgaattgtaaccga    
                                            cattgatacactcccggggctaa    


SPP00000035_1.0  221                           LVVGAS                  
                                               LVVGAS                  
                                T:T[acg]       LVVGAS                  
gi|357434094|-180974 ACGTAAGGA  Intron 7   CAGGtgggga                  
                       <2-----[180972:17068-2> tttgcg                  
                                               ggcgcc                  


SPP00000035_1.0  228                           VALECAGFLTGIGLDTTIMMRSI 
                                               VALECAGFLTG+GLDTT+MMRSI 
                               Y:Y[tac]        VALECAGFLTGLGLDTTVMMRSI 
gi|357434094|-170668 TGTATCCT  Intron 8   CAGACggcgtggtcagcgcgaagaacaa 
                      <1-----[170667:16964-1>  tctagcgttcgtgtacctttggt 
                                               gcggttccccgcggccacggacc 


SPP00000035_1.0  252 PLRGFDQ                       QMSSMVIEHMASHGTRFLR 
                     PLRGFDQ                       QMSS+V EHMASHGTRFLR 
                     PLRGFDQ                       QMSSLVTEHMASHGTRFLR 
gi|357434094|-169577 cccgtgcGTAGCGC  Intron 9   CAGcatttgagcagtcgactca 
                     ctggtaa<0-----[169556:16755-0>atccttcaatccagcgttg 
                     ccccccg                       agccgcggcgatcccgcgg 


SPP00000035_1.0  278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI           
                     GC PS+VRRLPDGQLQVTWED TTGKE TGTF TVLWA+           
                     GCTPSQVRRLPDGQLQVTWEDCTTGKEGTGTFSTVLWAV           
gi|357434094|-167495 gtactcgaaccggcccgatggtaagaggagataagctgg           
                     ggcccatggtcagatatcgaagccgaagcgctgcttgct           
                     gccccacggcgccgggccggccctcggcgccccccggca           


SPP00000035_1.0  317                           RVPDTRSLNLEKAGVDTSPDTQK 
                                               RVPDTRSLNLEKAGVDTSP+TQK 
                               G:G[ggt]        RVPDTRSLNLEKAGVDTSPNTQK 
gi|357434094|-167378 GGTAAGGG  Intron 10  CAGGTcgcgaaacatgaggggaacaaca 
                      <1-----[167377:15623-1>  gtcacggtataacgtacgcacaa 
                                               ataccatgtgggtgacttcctgg 


SPP00000035_1.0  341 ILVDSREATSVPHIYAIGDVVE                       GRPE 
                     ILVDSREATSVPHIYAIGDVVE                       GRPE 
                     ILVDSREATSVPHIYAIGDVVE                       GRPE 
gi|357434094|-156159 acggtcggatgccatgagggggGTATGGA  Intron 11  TAGgccg 
                     tttacgaccctcatactgatta<0-----[156093:15351-0>ggca 
                     cggccgacctgctctctccggg                       ggtg 


SPP00000035_1.0  367 LTPIAIMAGRLLVQRLFGGSSDLMDYDN                      
                     LTP A+MAGRLL QRLFGGSS LMDYD                       
                     LTPTAVMAGRLLAQRLFGGSSALMDYDK                      
gi|357434094|-153497 cacaggaggaccgccctggttgcagtgaGTGAGTT  Intron 12    
                     tccccttcggttcagttggcccttaaaa<0-----[153413:153068 
                     ggcgtcgtggcgaggcttgcacggcccg                      


SPP00000035_1.0  395    VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGQE VE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGQERVE                
gi|357434094|-153070 CAGgcaagtaccgtgtggctggggggccgcgcgg                
                     -0>tcccttcctaaggtgtcaaactcgagaagta                
                        tcgccccaggcccgggtgagagtctgggttg                


SPP00000035_1.0  426                        VYHAHYKPLEFTVAGRDASQCYVK   
                                            VYHAHYKPLEFTV GRDASQCYVK   
                                            VYHAHYKPLEFTVPGRDASQCYVK   
gi|357434094|-152974 GTGAGGC  Intron 13  CAGgtcgctaccgtagcgcggtcttga   
                     <0-----[152974:15128-0>taacaaactatctcggaccagata   
                                            ctcgttaaggcagtggtgcgtcag   


SPP00000035_1.0  450                        MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLREPPQLVLGLHFLGPNAGEVTQ 
gi|357434094|-151207 GTGAGCA  Intron 14  CAGagtcagccccgcgcctcgcaggggac 
                     <0-----[151207:15105-0>ttgtgaccatttgtattgcacgatca 
                                            ggcgggcggaggcgccccccacattg 


SPP00000035_1.0  476 GFALGI                          CGASYAQVMRTVGIHPT 
                     GFA+GI                          CG SY QVM+TVGIHPT 
                     GFAVGI           K:K[aag]       CGVSYVQVMQTVGIHPT 
gi|357434094|-150973 gtgggaAAGTAAGTC  Intron 15  CAGGtggttgcgacaggacca 
                     gtctgt  <2-----[150953:15012-2> ggtcatattactgtacc 
                     attgac                          tgcctaggggcgcctcg 


SPP00000035_1.0  500 CSEEVVKLRISKRSGLDPTVTGC                           
                     CSEEVVKLRISKRSGLDPTVTGC                           
                     CSEEVVKLRISKRSGLDPTVTGC                           
gi|357434094|-150074 ttggggaccatactgcgcagagt                           
                     gcaattatgtcagcgtacctcgg                           
                     ccgggcggcccgcacgccggacc                           


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>gi|357434094|gb|JH378269.1|:subseq(2055122,339400).pep
AGQRDYDLLVIGGGSGGLACAKEAAQLGRKVAVVDYVEPSPRGTRWGLGGTCVNVGCIPK
KLMHQAALLGGLIRDAPHYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLHDRKVKY
FNVKAGFVDEHTVRGVAKGGKEILLSADHIVIATGGRPRYPAHVEGALEYGITSDDIFWL
KESPGKTLVVGASYVALECAGFLTGLGLDTTVMMRSIPLRGFDQQMSSLVTEHMASHGTR
FLRGCTPSQVRRLPDGQLQVTWEDCTTGKEGTGTFSTVLWAVGRVPDTRSLNLEKAGVDT
SPNTQKILVDSREATSVPHIYAIGDVVEGRPELTPTAVMAGRLLAQRLFGGSSALMDYDK
VPTTVFTPLEYGCVGLSEEEAVARHGQERVEVYHAHYKPLEFTVPGRDASQCYVKMVCLR
EPPQLVLGLHFLGPNAGEVTQGFAVGIKCGVSYVQVMQTVGIHPTCSEEVVKLRISKRSG
LDPTVTGC
//
>gi|357434094|gb|JH378269.1|:subseq(2055122,339400).[200864:150004].sp
GCAGGTCAGCGGGACTATGATCTCCTGGTGATTGGCGGGGGATCTGGCGGCCTGGCTTGT
GCCAAGGAAGCTGCCCAGCTGGGAAGGAAGGTGGCCGTGGTGGACTACGTGGAACCTTCT
CCCCGAGGCACCCGGTGGGGCCTCGGGGGCACCTGCGTCAACGTCGGCTGCATTCCCAAG
AAGCTGATGCACCAGGCGGCACTGCTGGGGGGCCTGATCCGAGACGCCCCCCATTATGGC
TGGGAGGTGGCCCAGCCCGTGCCGCATGACTGGAGGAAGATGGCAGAAGCTGTTCAAAAT
CACGTGAAATCCTTGAACTGGGGCCACCGTGTCCAGCTGCACGACAGGAAAGTCAAGTAC
TTTAACGTCAAAGCTGGCTTTGTTGACGAGCACACAGTTCGCGGTGTTGCCAAAGGTGGG
AAAGAGATTCTGCTGTCAGCTGACCACATCGTCATCGCTACCGGAGGGCGGCCGAGGTAC
CCCGCACACGTCGAAGGTGCTTTGGAATATGGAATCACAAGCGATGACATCTTCTGGCTG
AAGGAGTCCCCTGGAAAAACGTTGGTGGTCGGGGCCAGCTACGTGGCCCTGGAGTGTGCT
GGCTTCCTCACCGGGCTCGGGCTGGACACCACAGTCATGATGCGAAGCATCCCCCTCCGC
GGCTTCGACCAGCAAATGTCCTCCTTGGTCACGGAGCACATGGCATCTCACGGCACCCGG
TTCCTGAGGGGGTGCACCCCCTCCCAAGTCAGGAGGCTCCCGGACGGCCAGCTGCAGGTC
ACCTGGGAGGACTGCACCACTGGCAAGGAGGGCACGGGCACCTTCAGCACCGTCCTGTGG
GCCGTAGGTCGAGTTCCAGACACCAGAAGTCTGAATTTGGAGAAGGCTGGGGTAGACACT
AGTCCCAACACTCAGAAGATCCTGGTGGACTCCCGGGAAGCCACCTCTGTGCCCCATATC
TATGCCATTGGCGACGTGGTGGAGGGGCGGCCTGAGCTGACGCCCACGGCTGTCATGGCT
GGGAGGCTCCTGGCACAGCGGCTCTTTGGTGGGTCCTCAGCCCTGATGGACTACGACAAG
GTTCCCACGACCGTCTTCACCCCACTGGAGTACGGCTGCGTGGGGCTGTCTGAGGAAGAG
GCAGTGGCTCGCCATGGGCAGGAGCGTGTTGAGGTCTATCACGCGCATTATAAACCACTG
GAGTTCACAGTGCCTGGGCGGGATGCGTCCCAGTGTTACGTAAAGATGGTGTGCCTGAGG
GAGCCCCCGCAGCTAGTGCTGGGCCTGCACTTCCTCGGCCCCAACGCAGGCGAAGTTACT
CAGGGATTTGCTGTGGGAATCAAGTGTGGGGTCTCCTATGTACAGGTGATGCAGACCGTG
GGCATCCATCCCACGTGCTCCGAGGAGGTGGTCAAGCTGCGCATCTCCAAGCGCTCAGGC
CTGGACCCCACGGTGACAGGCTGC
//
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	match	200864	150006	885.97	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	200864	200795	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	200794	190243	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	190242	190186	0.00	-	2	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	190185	189400	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	189399	189255	0.00	-	2	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	189254	188453	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	188452	188378	0.00	-	1	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	188377	186168	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	186167	186089	0.00	-	1	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	186088	185596	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	185595	185533	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	185532	181044	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	181043	180973	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	180972	170688	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	170687	170668	0.00	-	1	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	170667	169649	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	169648	169557	0.00	-	2	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	169556	167553	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	167552	167378	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	167377	156231	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	156230	156094	0.00	-	2	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	156093	153510	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	153509	153414	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	153413	153068	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	153067	152975	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	152974	151280	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	151279	151208	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	151207	151052	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	151051	150954	0.00	-	0	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	intron	150953	150127	0.00	-	.	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	GeneWise	cds	150126	150006	0.00	-	1	gi|357434094|gb|JH378269.1|:subseq(2055122,339400)-genewise-prediction-1
//