genewise output
Score 413.12 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000029_1.0    1 MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV 
                     MNNQARTPAPSSARTSTSVRASTPTRTPTP+RTPT  RTRTPIRTLTP  
                     MNNQARTPAPSSARTSTSVRASTPTRTPTPVRTPTAARTRTPIRTLTPS 
gi|357434082|-153245 aaacgcacgcttgcatatgcgtacacacacgcacaggcacacacacact 
                     taaacgcccccccgcccctgcccccgcccctgcccccgcgcctgctccc 
                     gtcgggcccccgcgcaggcgttcgcgagtacgtgcgcgtgcccgcgcat 


SPP00000029_1.0   50 LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP 
                     L    AGT            P LVPTPA ARI R VP        TPVP 
                     L----AGT------------PALVPTPAPARISRPVP--------TPVP 
gi|357434082|-153098 c    gga            cgcgcacgcgcatccgc        acgc 
                     t    cgc            ccttccccccgtcgctc        cctc 
                     g    cgt            ctgcgtatgcgcctgca        tatg 


SPP00000029_1.0   99 TPVPVRNPTPVPTPARTLTPPVRVPAP                       
                     TP P R PTP+P   RTLTP VR+PAP                       
                     TPAPARTPTPIPALVRTLTP-VRLPAP          A:A[gcc]     
gi|357434082|-153023 acgcgcacacacgcgcacac gcccgcGCCCGGNN  Intron 1     
                     cccccgcccctccttgctcc tgtccc <1-----[152944:152830 
                     tttccgcatgcgtgtgcgta cgcacc                       


SPP00000029_1.0  126      PAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLL--PEED 
                          PA +LAGIRA LP LDSY A ALP DP PEPAPE P+    EED 
                          PALVLAGIRAMLPFLDSYPASALPWDPLPEPAPEPPVSVSSEED 
gi|357434082|-152832 CAGCCcgcgcggacgaccttgttcgtgcctgcccgcgcgccgtgttggg 
                     -1>  cctttcgtgcttcttacacccctcgactcacccacctctccaaa 
                          ataagcgtgcgcccgcccgcgcgtgtgcgattgggtgtgacggc 


SPP00000029_1.0  169 PEPAPSLKLIPSVSSEAGPAPGPLPTRTPLAANSPGPTLDFTFRADPSA 
                     PEPAPSLKL+PSVS E GPAP PLP RTPLA N PGPTLDF  +ADPSA 
                     PEPAPSLKLVPSVSGETGPAPEPLPARTPLATNPPGPTLDF--KADPSA 
gi|357434082|-152695 cgcgcacacgctgtggagcgcgcccgcaccgaaccgcacgt  aggctg 
                     cacccgtattcctcgacgcccactccgcctccaccgcctat  acaccc 
                     tggggcggccggcccgtgccggctcgccagcgcacgcgacc  gacggc 


SPP00000029_1.0  218 IGLADPPIPSPVPSPILGTIPSAISLQNCTETFPSSSENFALDKRVLIR 
                      GLAD  IP  VP+PI GTIPSA SL N  E+F S+SENFALDKRV IR 
                     TGLADHTIPGSVPAPIPGTIPSAASLPNSAESFVSASENFALDKRVPIR 
gi|357434082|-152554 agcggcaacgtgcgcacgaactggttcatggatgtgagatgcgaagcac 
                     cgtcaactcgctccctcgctccccctcaccagttccgaatctaagtctg 
                     tgggtcctcctctgccggccggcccagttcaccccccgccggcggctta 


SPP00000029_1.0  267 VTY                          -CGL-XSYSLR--------- 
                     VTY                            G+  S  LR          
                     VTY           -:X[tga]       LGGVPDSPPLRPHDPICAPQ 
gi|357434082|-152407 gatTGGTGAGGA  Intron 2   AAGAcgggcgtccccccgcatgcc 
                     tca  <2-----[152396:15044-2> tggtcaccctgcaactgcca 
                     gtc                          gaacttttcgactccctctg 


SPP00000029_1.0  279 YILLKKSLEQQFPNHLLF                       EEDRAAQA 
                     YILLKKSLEQ+FP+ LLF                       EEDRAAQA 
                     YILLKKSLEQRFPDRLLF                       EEDRAAQA 
gi|357434082|-150381 taccaaacgcctcgccctGTAAGTG  Intron 3   CAGgggaggcg 
                     atttaagtaagtcagttt<0-----[150327:15024-0>aaagccac 
                     ctagagcgggatatcact                       gacatcgt 


SPP00000029_1.0  305 TGEFEVFVNGRLVHSKK                       RGDGFVNES 
                     TG+FEVFV+GRLVHSKK                       RGDGFV+E+ 
                     TGDFEVFVDGRLVHSKK                       RGDGFVDEA 
gi|357434082|-150218 aggtggtgggacgctaaGTGATTC  Intron 4   CAGagggtgggg 
                     cgatatttaggttacaa<0-----[150167:15007-0>ggagttaac 
                     agttagtatgagctcag                       gtcctgtgc 


SPP00000029_1.0  331 RLQKIVSVIDEEIKKR                                  
                     +LQKIVSVIDE IKKR                                  
                     KLQKIVSVIDEVIKKR                                  
gi|357434082|-150047 accaagagagggaaaa                                  
                     ataattgttaattaag                                  
                     gggatgctttggcggg                                  


//
Making a A in phase 1 intron
Making a X in phase 2 intron
>gi|357434082|gb|JH378281.1|:subseq(870235,302809).pep
MNNQARTPAPSSARTSTSVRASTPTRTPTPVRTPTAARTRTPIRTLTPSLAGTPALVPTP
APARISRPVPTPVPTPAPARTPTPIPALVRTLTPVRLPAPAPALVLAGIRAMLPFLDSYP
ASALPWDPLPEPAPEPPVSVSSEEDPEPAPSLKLVPSVSGETGPAPEPLPARTPLATNPP
GPTLDFKADPSATGLADHTIPGSVPAPIPGTIPSAASLPNSAESFVSASENFALDKRVPI
RVTYXLGGVPDSPPLRPHDPICAPQYILLKKSLEQRFPDRLLFEEDRAAQATGDFEVFVD
GRLVHSKKRGDGFVDEAKLQKIVSVIDEVIKKR
//
>gi|357434082|gb|JH378281.1|:subseq(870235,302809).[153245:149998].sp
ATGAATAACCAGGCGCGGACCCCCGCCCCCTCCTCGGCCCGGACCTCAACGTCGGTCCGG
GCTTCTACCCCGACCCGGACACCGACTCCAGTCCGGACTCCGACCGCGGCCCGGACTCGG
ACCCCCATCCGGACCCTGACCCCATCTCTGGCCGGGACTCCCGCTCTGGTCCCGACTCCA
GCTCCGGCCCGGATCTCCCGTCCGGTCCCAACTCCAGTTCCGACTCCTGCTCCCGCCCGG
ACCCCAACTCCGATCCCGGCTCTGGTTCGGACCCTGACTCCAGTCCGGCTCCCAGCCCCC
GCCCCAGCTCTAGTACTGGCCGGGATTCGGGCCATGCTCCCCTTCTTGGACTCCTACCCG
GCCTCGGCCCTGCCTTGGGATCCGCTCCCGGAACCTGCTCCGGAGCCGCCTGTGTCTGTG
TCATCCGAGGAGGACCCTGAGCCGGCGCCGAGCCTGAAGCTCGTCCCGTCGGTCTCCGGC
GAGACTGGGCCCGCCCCGGAGCCCCTTCCCGCGCGCACCCCACTGGCCACGAACCCACCC
GGGCCCACGCTAGACTTCAAGGCAGACCCGTCGGCCACTGGGCTGGCGGATCACACCATT
CCCGGCTCTGTCCCTGCGCCCATCCCGGGGACCATCCCGTCGGCCGCCTCCTTACCGAAT
TCTGCCGAAAGCTTCGTCTCCGCCAGCGAGAACTTCGCGCTGGACAAGAGGGTCCCTATT
CGAGTGACTTACTGACTGGGAGGAGTCCCTGATTCTCCTCCCCTGCGACCCCATGACCCC
ATCTGTGCCCCTCAGTACATTCTACTGAAAAAGAGCCTGGAGCAGCGATTTCCAGATCGC
CTACTCTTTGAGGAAGACAGAGCTGCCCAGGCTACAGGGGATTTTGAAGTGTTTGTAGAT
GGGAGACTGGTCCATTCCAAAAAGAGGGGTGACGGCTTTGTGGATGAGGCCAAGCTGCAG
AAAATTGTGAGCGTTATTGATGAGGTGATCAAGAAGAGG
//
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	match	153245	150000	444.07	-	.	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	cds	153245	152945	0.00	-	0	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	intron	152944	152830	0.00	-	.	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	cds	152829	152397	0.00	-	2	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	intron	152396	150443	0.00	-	.	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	cds	150442	150328	0.00	-	1	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	intron	150327	150243	0.00	-	.	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	cds	150242	150168	0.00	-	0	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	intron	150167	150075	0.00	-	.	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
gi|357434082|gb|JH378281.1|:subseq(870235,302809)	GeneWise	cds	150074	150000	0.00	-	0	gi|357434082|gb|JH378281.1|:subseq(870235,302809)-genewise-prediction-1
//