genewise output
Score 196.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000028_1.0   36 VAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDG 
                     VAGLRRFGC VC  IA+DL SLAGLL+Q GVRLVGVGP+ALGLQEFLDG 
                     VAGLRRFGCGVCGXIARDLGSLAGLLEQPGVRLVGVGPQALGLQEFLDG 
gi|357434142|-153731 gggccctgtggtgtagcgcgacggccgccggccggggccgcgccgtcgg 
                     tcgtggtgggtggatcgatggtcgttaacgtgttgtgcactgtaattag 
                     gcgggccgcggccgccgcccccggcgggccgcggcggcgcgtgggcgcc 


SPP00000028_1.0   85 DYFAG                          LYLDESKQLYKELGFK   
                      YFAG                          LYLDESKQLYKELGFK   
                     GYFAG          E:E[gag]        LYLDESKQLYKELGFK   
gi|357434142|-153584 gttggGGTGCGTC  Intron 1   CAGAGctcggaacctagcgta   
                     gatcg <1-----[153568:15313-1>  tataagaataaatgta   
                     cccgc                          ccgtgcggttgggccg   


SPP00000028_1.0  107                           YNSLSILPAALGKPVRDVAAKAK 
                                               Y+SL +LP ALGK VRDVAAK   
                                R:R[cgg]       YSSLGVLPVALGKSVRDVAAKVC 
gi|357434142|-153081 CGGTGAGTG  Intron 2   CAGGtaacggccggcgatgcggggagt 
                       <2-----[153079:15249-2> aggtgttctctgactgatccatg 
                                               tccgtcctgccggcgttatcgtt 


SPP00000028_1.0  131 AVGIQGNLSGDLLQSGGLLVVSK                           
                     A      L G                                        
                     AGRGWWELPG---------AFPL          G:G[ggt]         
gi|357434142|-152422 ggcgttgccg         gtccGGTCTGAC  Intron 3   CAGGT 
                     cgggggatcg         ctct <1-----[152379:15011-1>   
                     cagggggcag         ccta                           


SPP00000028_1.0  155 GDKVLLHFVQKSPGDYVPKEHILQVLGISAEVCASDPPQ           
                     GD VLLHFVQKSPGDYVP EHILQVLGISAEVCAS PPQ           
                     GDTVLLHFVQKSPGDYVPWEHILQVLGISAEVCASGPPQ           
gi|357434142|-150116 ggagccctgcatcggtgctgcaccgcgatgggtgagccc           
                     gactttattaaccgaatcgaattattgtccatgcggcca           
                     tcagggtccggtatcctcggtcggcgcctaggtccggtg           


//
Making a E in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|357434142|gb|JH378221.1|:subseq(5162851,303731).pep
VAGLRRFGCGVCGXIARDLGSLAGLLEQPGVRLVGVGPQALGLQEFLDGGYFAGELYLDE
SKQLYKELGFKRYSSLGVLPVALGKSVRDVAAKVCAGRGWWELPGAFPLGGDTVLLHFVQ
KSPGDYVPWEHILQVLGISAEVCASGPPQ
//
>gi|357434142|gb|JH378221.1|:subseq(5162851,303731).[153731:149998].sp
GTGGCCGGGCTGCGGCGCTTCGGGTGCGGGGTGTGCGGCTAGATCGCCCGGGACCTCGGC
AGCCTCGCGGGGCTCCTGGAGCAGCCCGGCGTGCGCCTGGTGGGCGTGGGGCCCCAGGCC
CTGGGTCTGCAGGAGTTCCTGGACGGCGGCTACTTCGCGGGCGAGCTCTACCTGGATGAG
AGCAAGCAGCTTTATAAGGAGCTGGGCTTCAAGCGGTATAGCAGCCTGGGTGTCCTCCCT
GTGGCCCTCGGGAAGTCCGTGCGTGATGTAGCTGCCAAGGTTTGTGCCGGACGGGGGTGG
TGGGAGCTCCCAGGGGCCTTCCCTCTAGGTGGTGACACAGTGCTGCTGCATTTCGTCCAG
AAGTCTCCAGGTGACTACGTTCCCTGGGAGCATATCCTGCAGGTCCTGGGCATCTCTGCA
GAGGTGTGTGCCAGCGGGCCGCCTCAG
//
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	match	153731	150000	204.27	-	.	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	cds	153731	153569	0.00	-	0	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	intron	153568	153132	0.00	-	.	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	cds	153131	153080	0.00	-	2	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	intron	153079	152493	0.00	-	.	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	cds	152492	152380	0.00	-	1	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	intron	152379	150119	0.00	-	.	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
gi|357434142|gb|JH378221.1|:subseq(5162851,303731)	GeneWise	cds	150118	150000	0.00	-	2	gi|357434142|gb|JH378221.1|:subseq(5162851,303731)-genewise-prediction-1
//