genewise output
Score 148.70 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000016_1.0    1 MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKK  
                     MV ISN QVLDS+S+SPWRLSLITDFFWGIAEFVVL F  L      K  
                     MVSISNKQVLDSQSESPWRLSLITDFFWGIAEFVVLCFSKLC---FSK  
gi|357434211|-150158 agtataacgtgacagtctatttaagtttgaggtggttttact   taa  
                     ttctcaaattagagaccggtcttcattggtcattttgtcatg   tga  
                     gcccacaaagccgtgtagaatgaatccgaatgtgtgttaatc   ccg  


SPP00000016_1.0   49                           RSYGNSSDSRYDDGRGPPGNPPR 
                                               RSYGNSSDSRYDDGRGP GNPP+ 
                                R:I[ata]       RSYGNSSDSRYDDGRGPLGNPPQ 
gi|357434211|-150023 ATGTGAAAA  Intron 1   AAGAaatgattgtatgggagccgaccc 
                       <2-----[150021:14984-2> ggagaccacgaaagggctgacca 
                                               actacattcatttaagagactca 


SPP00000016_1.0   73 RMGRINHLRGPSPPPMAG                                
                     RMGRI+HLRGPSPPPMAG                                
                     RMGRISHLRGPSPPPMAG                                
gi|357434211|-149776 aagaaacccgcacccagg                                
                     gtggtgatggcgccctcg                                
                     agtacttgtcctttagtt                                


//
Making a I in phase 2 intron
>gi|357434211|gb|JH378152.1|:subseq(14782422,300158).pep
MVSISNKQVLDSQSESPWRLSLITDFFWGIAEFVVLCFSKLCFSKIRSYGNSSDSRYDDG
RGPLGNPPQRMGRISHLRGPSPPPMAG
//
>gi|357434211|gb|JH378152.1|:subseq(14782422,300158).[150158:149721].sp
ATGGTCTCCATCTCAAACAAACAAGTATTGGACAGCCAGAGTGAGTCTCCATGGAGATTA
TCTTTGATAACAGATTTCTTCTGGGGAATAGCTGAGTTTGTGGTTTTGTGTTTTTCAAAA
CTTTGCTTCAGCAAGATAAGAAGCTATGGAAACTCATCTGATTCCAGATATGATGATGGA
AGAGGGCCACTGGGAAACCCTCCCCAAAGAATGGGTAGAATCAGTCATCTGCGTGGCCCC
AGTCCTCCTCCAATGGCTGGT
//
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	GeneWise	match	150158	149723	150.70	-	.	gi|357434211|gb|JH378152.1|:subseq(14782422,300158)-genewise-prediction-1
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	GeneWise	cds	150158	150022	0.00	-	0	gi|357434211|gb|JH378152.1|:subseq(14782422,300158)-genewise-prediction-1
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	GeneWise	intron	150021	149847	0.00	-	.	gi|357434211|gb|JH378152.1|:subseq(14782422,300158)-genewise-prediction-1
gi|357434211|gb|JH378152.1|:subseq(14782422,300158)	GeneWise	cds	149846	149723	0.00	-	1	gi|357434211|gb|JH378152.1|:subseq(14782422,300158)-genewise-prediction-1
//