genewise output
Score 449.93 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000011_1.0    1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYA 
                     MEPLAAYPLK SGPRAKVFAVLLS+VLCTVTL+LLQLKFLKPKINSFYA 
                     MEPLAAYPLKYSGPRAKVFAVLLSMVLCTVTLLLLQLKFLKPKINSFYA 
gi|357434243|-153825 agccggtccattgcagagtggtctagctagactccccatcacaaaattg 
                     tactccactaacgcgcattctttctttgctcttttatattacatagtac 
                     ggttatcgaatcgcaagatatggtgtacaaaagtaaaaccatacccttg 


SPP00000011_1.0   50 FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKDAKGR VSLEKYKGK                       VSLVVNV 
                     FEVKDAKGRPVSLEKYKGK                       VSLVVNV 
gi|357434243|-153678 tggaggagacgtcgatagaGTAAGTT  Intron 1   GAGgtcggag 
                     tataacaggctctaaaaga<0-----[153621:15302-0>tctttat 
                     taggtaaaatttgagtaca                       taatacg 


SPP00000011_1.0   76 ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDCQLTDRNYL LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
gi|357434243|-153000 gagtccagaattgcagccagtgctctagcgtctactggtgcccaagggt 
                     cgagatcagaatctaataaatgccatgttctcgaatgacacgcgaatac 
                     ttccacacatcaaggagcagcaaccccggtcgctgtaaggccgcgaaat 


SPP00000011_1.0  125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
gi|357434243|-152853 tgaaatggatcatcaaaacgtgggcgtatcg                   
                     tcgaaagtctcttaatattgcagacctgttt                   
                     taaaccaaacccccgtgtaataaatatattt                   


SPP00000011_1.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SSKKEPRWNFWKYLVNPEGQVVK 
                               D:D[gat]        SSKKEPRWNFWKYLVNPEGQVVK 
gi|357434243|-152760 GGTAAATA  Intron 2   TAGATttaagcatattatcgacggcgga 
                      <1-----[152759:15016-1>  ccaaacggatgaattacagatta 
                                               taggaaggttggtgcctgtatgg 


SPP00000011_1.0  180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                     FW+PEEPIEVIRPDIAALVRQ+II+KKEDL                    
                     FWRPEEPIEVIRPDIAALVRQLIIRKKEDL                    
gi|357434243|-150089 ttacggcaggaacgaggcgaccaaaaaggc                    
                     tggcaactattgcatccttgatttgaaaat                    
                     cggagactaccgtcaatgtaagcaagagta                    


//
Making a D in phase 1 intron
>gi|357434243|gb|JH378120.1|:subseq(17257600,303825).pep
MEPLAAYPLKYSGPRAKVFAVLLSMVLCTVTLLLLQLKFLKPKINSFYAFEVKDAKGRPV
SLEKYKGKVSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSK
EVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF
WRPEEPIEVIRPDIAALVRQLIIRKKEDL
//
>gi|357434243|gb|JH378120.1|:subseq(17257600,303825).[153825:149998].sp
ATGGAGCCTCTTGCAGCTTACCCGCTAAAATATTCCGGGCCCAGAGCAAAGGTATTTGCA
GTTTTGCTGTCTATGGTTCTATGCACAGTAACACTATTGCTTCTACAACTAAAATTCCTC
AAACCTAAAATCAACAGCTTTTATGCGTTTGAAGTGAAGGATGCAAAAGGAAGACCTGTT
TCTCTGGAAAAGTATAAAGGCAAAGTTTCACTAGTTGTAAACGTGGCTAGTGACTGCCAA
CTCACAGACAGAAATTACTTAGCACTGAAGGAACTGCACAAAGAGTTCGGACCATCCCAC
TTCAGCGTGCTGGCTTTCCCGTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCGAGCAAG
GAAGTAGAATCTTTTGCAAGAAAAAACTACGGAGTAACATTCCCCATCTTCCACAAGATT
AAGATTCTAGGATCTGAAGGAGAACCTGCATTTAGATTTCTTGTTGATTCTTCAAAGAAG
GAACCAAGGTGGAATTTTTGGAAGTATCTGGTCAACCCTGAGGGTCAAGTTGTGAAGTTC
TGGAGGCCAGAGGAACCCATTGAAGTCATCAGGCCTGACATAGCAGCTCTGGTTAGACAA
CTGATCATAAGAAAGAAAGAGGATCTA
//
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	GeneWise	match	153825	150000	449.93	-	.	gi|357434243|gb|JH378120.1|:subseq(17257600,303825)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	GeneWise	cds	153825	153622	0.00	-	0	gi|357434243|gb|JH378120.1|:subseq(17257600,303825)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	GeneWise	intron	153621	153022	0.00	-	.	gi|357434243|gb|JH378120.1|:subseq(17257600,303825)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	GeneWise	cds	153021	152760	0.00	-	0	gi|357434243|gb|JH378120.1|:subseq(17257600,303825)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	GeneWise	intron	152759	150161	0.00	-	.	gi|357434243|gb|JH378120.1|:subseq(17257600,303825)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	GeneWise	cds	150160	150000	0.00	-	2	gi|357434243|gb|JH378120.1|:subseq(17257600,303825)-genewise-prediction-1
//