genewise output
Score 1058.11 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000036_1.0  192 RVKELFSSLGVECNVLELDQV                          DG 
                     +VKELFSSLG EC VLELDQV                          DG 
                     QVKELFSSLGTECYVLELDQV          D:D[gat]        DG 
gi|357434057|g148917 cgagcttttgagttgtgcgcgGGTAAGTA  Intron 1   TAGATgg 
                     ataattcctgcagattataat <1-----[148981:15000-1>  ag 
                     ggaactttgatattcgattat                          tg 


SPP00000036_1.0  216 ARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ                
                     A++QEVL EITNQKTVPNIFVNKVHVGGCDQTFQ                
                     AKIQEVLLEITNQKTVPNIFVNKVHVGGCDQTFQ                
gi|357434057|g150012 gaacggctgaaacaagcaatgaagcgggtgcatc                
                     cataatttatcaaactcatttaatatgggaacta                
                     cgtaaggaacttgacgctttgtagtttatcatcg                


SPP00000036_1.0  250                        AYQSGLLQKLLQEDLAYDYDLIIIGG 
                                            AYQSGLLQKLL ED AYDYDLI+IGG 
                                            AYQSGLLQKLLHEDSAYDYDLIVIGG 
gi|357434057|g150114 GTAATAA  Intron 2   TAGgtcagttcacccggtgtgtgcagagg 
                     <0-----[150114:15184-0>caaggttaattaaaccaaaattttgg 
                                            atgttggagctcatgattttgccctt 


SPP00000036_1.0  276 GSGGLSCAK                       EAAILGKKVMVLDFVVP 
                     GSGGLSCAK                       EAAILGKKVMVLDFVVP 
                     GSGGLSCAK                       EAAILGKKVMVLDFVVP 
gi|357434057|g151920 gtggcttgaGTATGAA  Intron 3   TAGgggatgaagagcgtggc 
                     gcggtcgca<0-----[151947:15219-0>accttgaattttatttc 
                     tttctgtag                       atctgagatgtacttcg 


SPP00000036_1.0  302 SPQGTSW                          LGGTCVNVGCIPKKLM 
                     SPQGT W                          LGGTCVNVGCIPKKLM 
                     SPQGTCW          G:G[ggt]        LGGTCVNVGCIPKKLM 
gi|357434057|g152244 tccgattGGTAAGCT  Intron 4   CAGGTcggatgaggtacaata 
                     ccagcgg <1-----[152266:15301-1>  tggcgtatggtcaatt 
                     atgcgcg                          ttcttatattttgagg 


SPP00000036_1.0  326 HQAALLGQALCDSRKFGWEYNQQ                           
                     HQAALLGQAL DSRKFGWEYNQQ                           
                     HQAALLGQALHDSRKFGWEYNQQ          V:V[gtg]         
gi|357434057|g153063 ccggctgcgtcgtaatgtgtaccGGTGAGTA  Intron 5   TAGTG 
                     aaccttgactaacgatggaaaaa <1-----[153133:15618-1>   
                     tgtctgggaatcaggtcggttaa                           


SPP00000036_1.0  350 RHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK   
                     +HNWETMTKAIQNHI SLN+GY LSLREKAVAYVNSYGEFVEHHKIK   
                     KHNWETMTKAIQNHIRSLNFGYGLSLREKAVAYVNSYGEFVEHHKIK   
gi|357434057|g156186 acatgaaaagacacactcatgtgtttagagggtgattggtggccaaa   
                     aaagactcactaaatgctatgagtctgaactcatacagattaaaata   
                     gccggggaaatgcccctactccggtggagtgctctctaattatcaag   


SPP00000036_1.0  397                        ATNKKGQETYYTAAQFVIATGERPRY 
                                            ATNK GQETYYTAAQFVIATGERPRY 
                                            ATNKNGQETYYTAAQFVIATGERPRY 
gi|357434057|g156327 GTACTGT  Intron 6   AAGgaaaagcgattaggctgagaggacct 
                     <0-----[156327:16025-0>ccaaagaacaacccatttccgagcga 
                                            actatagatttttagtcaagtagggt 


SPP00000036_1.0  423 LGIQGDKEYCIT                          DDLFSLPYCPG 
                     LGIQGDKEYCIT                          DDLFSLPYCPG 
                     LGIQGDKEYCIT           S:S[agt]       DDLFSLPYCPG 
gi|357434057|g160330 tgacggagttaaAGGTAAGGT  Intron 7   CAGTggcttccttcg 
                     tgtagaaaagtc  <2-----[160368:16115-2> aattctcagcg 
                     aacaataacttc                          tctttgttctc 


SPP00000036_1.0  447 KTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYM 
                     KTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYM 
                     KTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYM 
gi|357434057|g161190 aatggggttggcgtggtcggtgcggagagctacccgtgcgaggaggtta 
                     actttgccatctagcgttcgtgtatctttgctttggtaaatcaatgcat 
                     agagatctcccggtagtgtctcgtcatgacactctctcaagagagtccg 


SPP00000036_1.0  496 EQHGVKFLRKFIPVM                       VQQLEKGSPGK 
                     EQHGV+FL KFIPVM                       VQQLEKGSPGK 
                     EQHGVRFLWKFIPVM                       VQQLEKGSPGK 
gi|357434057|g161337 gccggatctatacgaGTAAGGC  Intron 8   TAGgcctgagtcga 
                     aaagtgttgattctt<0-----[161382:16263-0>taataagccga 
                     ggttggcggacatgg                       tagggatatag 


SPP00000036_1.0  522 LKVLAKSTEGTETIEGVYNT                       VLLAIG 
                     LKVLAKSTEGTETIE VYNT                       VLLAIG 
                     LKVLAKSTEGTETIEEVYNT                       VLLAIG 
gi|357434057|g162667 cagtgataggagaagggtaaGTGAGTT  Intron 9   CAGgttgag 
                     tattcaccagcactaataac<0-----[162727:17054-0>tttctg 
                     gaagtattaaaaataactca                       tgattt 


SPP00000036_1.0  548 RDSCTRKIGLEKIGVKINE                          SGKI 
                     RDSCTRKIGLEKIGVKINE                          SGKI 
                     RDSCTRKIGLEKIGVKINE           K:K[aaa]       SGKI 
gi|357434057|g170561 cgttaaaagtgaaggaaagAAGTAAGTA  Intron 10  CAGAagaa 
                     gacgcgatgtaatgtataa  <2-----[170620:17116-2> ggat 
                     tcctagaacgggttcattg                          taaa 


SPP00000036_1.0  572 PVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEK  
                     PVNDVEQTNVPYVYAVGDILE KPELTPVA+QSGKLLA+RLFGASLEK  
                     PVNDVEQTNVPYVYAVGDILEGKPELTPVAVQSGKLLARRLFGASLEK  
gi|357434057|g171175 cgagggcaagctgtggggatggacgcacgggctgaccgcactggttga  
                     ctaataacatcatactgattagacatcctctacgattcggttgcctaa  
                     tattgagctgatctttgttggtgagctcccagacggatgactgctaag  


SPP00000036_1.0  620                        CDYINVPTTVFTPLEYGCCGLSEEKA 
                                            CDYINVPTTVFTPLEYGCCGLSEEKA 
                                            CDYINVPTTVFTPLEYGCCGLSEEKA 
gi|357434057|g171319 GTAAGTT  Intron 11  CAGtgtaagcaagtaccgtgttgttggag 
                     <0-----[171319:17729-0>gaatatcccttcctaaggggtcaaac 
                                            ttttttatggtttggttctaataggt 


SPP00000036_1.0  646 IEVYKKENLE                       IYHTLFWPLEWTVAGR 
                     IE+YKKENLE                       IYHTLFWPLEWTVAGR 
                     IEIYKKENLE                       IYHTLFWPLEWTVAGR 
gi|357434057|g177372 agataagacgGTAAGAT  Intron 12  CAGatcatttccgtaggga 
                     tataaaaata<0-----[177402:18186-0>taacttgctagctcgg 
                     taataagtaa                       atttgcgttagaatca 


SPP00000036_1.0  672 ENNTCYAKIICNKFDH                       DRVIGFHILG 
                     ENNTCYAKIICNKFDH                       DRVIGFHILG 
                     ENNTCYAKIICNKFDH                       DRVIGFHILG 
gi|357434057|g181916 gaaattgaaataatgcGTATGTA  Intron 13  AAGgcgagtcacg 
                     aaacgacattgaataa<0-----[181964:18458-0>agttgtattg 
                     gccttcagacctatct                       tggagtttta 


SPP00000036_1.0  698 PNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE               
                     PNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE               
                     PNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE               
gi|357434057|g184620 caggggacgtgggaatgcaacccggaagaccatgg               
                     cacgatcagtccctaggtcaattaactgtaccgga               
                     atctgtcaatatagatgctagattcctatccatgg               


SPP00000036_1.0  733                        VFTTLEITKSSGLDITQKGC       
                                            VFTTLEITKSSGLDITQKGC       
                                            VFTTLEITKSSGLDITQKGC       
gi|357434057|g184725 GTAGGAA  Intron 14  CAGgtaatgaaattgcgaacagt       
                     <0-----[184725:18524-0>ttcctatcaccgtatcaagg       
                                            gcgtgacaacgaacctgacc       


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>gi|357434057|gb|JH378306.1|:subseq(903858,334727).pep
QVKELFSSLGTECYVLELDQVDDGAKIQEVLLEITNQKTVPNIFVNKVHVGGCDQTFQAY
QSGLLQKLLHEDSAYDYDLIVIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTCWGLG
GTCVNVGCIPKKLMHQAALLGQALHDSRKFGWEYNQQVKHNWETMTKAIQNHIRSLNFGY
GLSLREKAVAYVNSYGEFVEHHKIKATNKNGQETYYTAAQFVIATGERPRYLGIQGDKEY
CITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKV
GSYMEQHGVRFLWKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEEVYNTVLLAIGRDSC
TRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEGKPELTPVAVQSGKLLARR
LFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEIYKKENLEIYHTLFWPLEWTVAGR
ENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCG
EVFTTLEITKSSGLDITQKGC
//
>gi|357434057|gb|JH378306.1|:subseq(903858,334727).[148917:185304].sp
CAGGTGAAAGAACTCTTTTCTTCTTTGGGAACTGAATGTTATGTCTTGGAACTTGATCAA
GTTGATGATGGGGCCAAGATTCAAGAAGTGCTGTTAGAAATCACTAATCAGAAAACCGTG
CCCAATATTTTTGTGAATAAAGTGCATGTTGGTGGATGTGACCAAACTTTCCAGGCATAT
CAGAGTGGTTTGTTGCAAAAGCTCCTTCACGAAGATTCGGCATATGATTATGATCTGATC
GTCATCGGTGGTGGTTCTGGTGGCCTTTCGTGTGCAAAGGAAGCTGCCATTTTGGGAAAG
AAAGTTATGGTTCTAGACTTTGTTGTCCCGTCACCTCAGGGCACGTGCTGGGGTCTTGGT
GGCACTTGTGTAAATGTAGGTTGTATTCCTAAGAAATTGATGCATCAGGCTGCCCTTTTG
GGGCAGGCATTACATGACTCAAGGAAGTTTGGCTGGGAGTATAATCAACAAGTGAAGCAC
AACTGGGAGACGATGACAAAAGCAATTCAGAACCACATCCGCTCTCTAAACTTTGGCTAC
GGGTTGTCTTTGAGGGAAAAGGCTGTGGCCTATGTCAATTCCTATGGAGAATTTGTTGAA
CATCACAAAATAAAGGCAACCAATAAAAATGGACAGGAAACTTATTATACTGCTGCACAG
TTTGTCATAGCAACGGGTGAAAGGCCGCGGTATTTAGGAATCCAAGGAGATAAAGAATAC
TGTATTACCAGTGATGACCTTTTTTCTCTGCCTTATTGCCCTGGCAAAACGTTAGTGGTA
GGTGCCTCTTACGTCGCCCTGGAGTGTGCAGGGTTTCTGGCTGGCTTTGGCCTGGATGTC
ACAGTTATGGTACGCTCAATCCTTCTCCGTGGCTTTGACCAAGAAATGGCAGAGAAAGTG
GGTTCCTACATGGAGCAGCATGGTGTGAGGTTCCTGTGGAAATTCATACCTGTGATGGTT
CAACAGTTGGAGAAAGGTTCACCTGGAAAGCTGAAAGTATTGGCTAAATCTACTGAAGGA
ACAGAAACAATTGAAGAAGTCTATAACACAGTTTTGTTAGCTATTGGTCGTGACTCCTGT
ACAAGGAAAATAGGCTTGGAGAAGATTGGTGTCAAAATTAATGAGAAAAGTGGAAAAATA
CCTGTAAATGATGTGGAACAGACCAATGTGCCATATGTCTATGCTGTTGGGGATATTTTG
GAGGGTAAGCCAGAGCTCACTCCCGTCGCCGTACAGTCAGGCAAGCTGCTAGCTCGGAGA
CTCTTTGGGGCCTCTTTAGAAAAGTGTGATTATATTAATGTTCCAACTACGGTGTTTACT
CCTCTGGAGTATGGTTGCTGTGGATTATCTGAAGAGAAGGCTATTGAAATATATAAAAAA
GAGAATCTAGAAATATATCATACTTTGTTCTGGCCTCTTGAATGGACAGTAGCTGGCAGA
GAGAACAACACTTGTTACGCAAAGATAATCTGCAATAAATTTGACCATGATCGGGTGATA
GGGTTTCATATTCTTGGACCAAATGCCGGTGAGGTTACCCAAGGATTTGCAGCTGCAATG
AAATGTGGGCTCACTAAACAGCTACTTGATGACACCATTGGAATTCACCCCACATGTGGG
GAGGTGTTCACGACTTTGGAAATCACAAAATCCTCGGGACTAGACATCACTCAGAAAGGC
TGC
//
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	match	148917	185304	1058.11	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	148917	148980	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	148981	150003	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	150004	150113	0.00	+	2	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	150114	151841	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	151842	151946	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	151947	152192	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	152193	152265	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	152266	153012	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	153013	153132	0.00	+	2	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	153133	156183	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	156184	156326	0.00	+	2	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	156327	160251	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	160252	160367	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	160368	161155	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	161156	161381	0.00	+	1	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	161382	162633	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	162634	162726	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	162727	170542	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	170543	170619	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	170620	171161	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	171162	171318	0.00	+	1	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	171319	177293	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	177294	177401	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	177402	181867	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	181868	181963	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	181964	184589	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	184590	184724	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	intron	184725	185244	0.00	+	.	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	GeneWise	cds	185245	185304	0.00	+	0	gi|357434057|gb|JH378306.1|:subseq(903858,334727)-genewise-prediction-1
//