genewise output
Score 471.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000026_1.0    1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTD+FLSKPQKAALEYL 
                     MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDMFLSKPQKAALEYL 
gi|357434097|g150000 attccgcattaagattaggggcggggtgcccgaagatctaccaggcgtc 
                     tcttaacgttctgtgctgcgctgccctctttcacatttcacaacctaat 
                     gtccgcatcccggggcttgacggttcgagggccacgtgcgcgagaggcg 


SPP00000026_1.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     EDIDL TLEK                          PRT+KAKELWEKN 
                     EDIDLNTLEK          E:E[gaa]        PRTLKAKELWEKN 
gi|357434097|g150147 ggagcaacgaGGTAAGTG  Intron 1   TAGAAcaatagagctgaa 
                     aatatactaa <1-----[150178:15225-1>  cgctacaatgaaa 
                     gctcgcaggg                          agtgaagaagaat 


SPP00000026_1.0   74 GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
gi|357434097|g152294 gggaaggcacgttctcgGTGAGTG  Intron 2   CAGggggcttca 
                     gctttctggcggttgga<0-----[152345:15567-0>accatccta 
                     atgtgtgggactcctag                       atgtgccga 


SPP00000026_1.0  100 SMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK            
                       LD+LGVPLYAVVKEHI+TEVKDFQPYFKGEIFLDEK            
                     PKLDELGVPLYAVVKEHIKTEVKDFQPYFKGEIFLDEK            
gi|357434097|g155706 catggcggcctgggagcaaaggagtccttaggatcgga            
                     cataatgtctacttaaatacataatacatagatttaaa            
                     cggtgtcctctagaggccgtaggtcgttcaaaccgtag            


SPP00000026_1.0  138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQRRKMMFMGFIRLGVWYNFF 
gi|357434097|g155820 GTGCGTG  Intron 3   TAGaattgccacaaatagtaccggttatt 
                     <0-----[155820:15715-0>aatagcaggattttgttgtgtgaatt 
                                            agcttaagggggtgatctgaggcccc 


SPP00000026_1.0  164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RAWNGGFSGNLEGEGF+LGGVFVVGSGKQ                     
                     RAWNGGFSGNLEGEGFVLGGVFVVGSGKQ                     
gi|357434097|g157230 cgtaggttgacggggtgcgggtgggtgacGTAAGTT  Intron 4    
                     gcgaggtcgatagagtttggttttgcgaa<0-----[157317:160850
                     acgtacctacgaaaccccgattggaaagg                     


SPP00000026_1.0  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
                        G+LLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
                        GVLLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
gi|357434097|g160848 TAGggccgccgagtggagacctgcgggaaaaccatgtgaa          
                     -0>gtttaagaaatgaatattcttaccattacactccaaa          
                        cttcgcaaaatacaacatttgattggcaagtgcagaa          


//
Making a E in phase 1 intron
>gi|357434097|gb|JH378266.1|:subseq(40982,310961).pep
MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDMFLSKPQKAALEYLEDIDLNTLEKE
PRTLKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKPKLDELGVPLYAVVKEHIKTE
VKDFQPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFV
LGGVFVVGSGKQGVLLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK
//
>gi|357434097|gb|JH378266.1|:subseq(40982,310961).[150000:160961].sp
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCGGGA
GCCCTGGGGGCTGCTGCCTTGGCACTGCTGCTGGCCAACACAGACATGTTTCTGTCCAAG
CCCCAGAAAGCGGCACTGGAGTACCTGGAGGACATTGACCTGAACACACTGGAGAAGGAA
CCAAGGACTTTGAAAGCAAAGGAACTATGGGAAAAAAATGGAGCTGTGATTATGGCTGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGGATCTGTCCTCCCTGAAACCC
AAGTTGGATGAGCTTGGCGTCCCTCTCTATGCAGTGGTAAAGGAGCACATCAAGACTGAA
GTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGAAAAGAAAAAGTTC
TATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTAC
AACTTCTTCCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCGTC
CTCGGGGGAGTTTTTGTGGTGGGATCAGGAAAGCAGGGCGTTCTTCTCGAGCACCGAGAA
AAAGAATTTGGAGACAAAGTAAACCTACTTTCTGTTCTGGAAGCTGCTAAGATGATCAAA
CCACAGACTTTGGCCTCAGAGAAAAAA
//
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	match	150000	160961	471.36	+	.	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	cds	150000	150177	0.00	+	0	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	intron	150178	152252	0.00	+	.	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	cds	152253	152344	0.00	+	2	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	intron	152345	155678	0.00	+	.	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	cds	155679	155819	0.00	+	0	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	intron	155820	157151	0.00	+	.	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	cds	157152	157316	0.00	+	0	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	intron	157317	160850	0.00	+	.	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	GeneWise	cds	160851	160961	0.00	+	0	gi|357434097|gb|JH378266.1|:subseq(40982,310961)-genewise-prediction-1
//