genewise output
Score 550.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000020_1.0    1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSV 
                     MWRSLGLALALCLLP+GGTESQDQSSLCKQPPAW+IRDQDPMLNS+GSV 
                     MWRSLGLALALCLLPAGGTESQDQSSLCKQPPAWNIRDQDPMLNSSGSV 
gi|357434243|g150000 ataacgcgcgctcccgggagacgcatttacccgtaaagcgcacatagtg 
                     tgggtgtctctgttccggcagaaagctgaacccgatgaaacttacggct 
                     ggacggtcgtctcccaaaagcgcaccgtgacacgcaatataggccttag 


SPP00000020_1.0   50 TVVALLQASXYLCILQAS                          LEDLR 
                     TVVALLQASXYLCILQAS                          LEDLR 
                     TVVALLQASXYLCILQAS           K:R[aga]       LEDLR 
gi|357434243|g150147 agggcccgattctaccgtAGGTAAGAC  Intron 1   TAGAtggcc 
                     cttcttacggatgttacc  <2-----[150203:15126-2> taatg 
                     tgttctaacacgctggat                          gacga 


SPP00000020_1.0   74 VKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD 
                     VKL+KEGYSNISYI+VNHQG+SS+L+YTHLKN+VSEHIPVYQQEENQ D 
                     VKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQPD 
gi|357434243|g151281 gacgaggttaattaagaccgcttctataccaacgtgcacgtccggaccg 
                     tataaagacatcatttaaagtccatgacataaatcaatctaaaaaaaca 
                     aaggaaatttttttttttaacttaaacattgtgtagtttttgaaacaat 


SPP00000020_1.0  123 VWTLLNGSKDDFLIYD                          CGRLVYH 
                     VW LLNG+KDDFLIYD                          CGRLVYH 
                     VWALLNGNKDDFLIYD           R:R[aga]       CGRLVYH 
gi|357434243|g151428 gtgctagaaggtcatgAGGTTCGTA  Intron 2   TAGAtgccgtc 
                     tgcttagaaaatttaa  <2-----[151478:15359-2> gggttaa 
                     cgttatacatcctatc                          tcttgtt 


SPP00000020_1.0  147 LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT                  
                     LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT                  
                     LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT                  
gi|357434243|g153622 cgtctttcatctggggaaagttgaatgattca                  
                     tgtctcttctcataactatcagaaaggagctc                  
                     ttgttccaacataaactgtcctagatacctcg                  


SPP00000020_1.0  179                        TLKDEDFCKRVSLATVDKTVETPSPH 
                                            TLKDEDFCK VSLATV+KT E P PH 
                                            TLKDEDFCKNVSLATVNKTTEAPQPH 
gi|357434243|g153718 GTATTTT  Intron 3   CAGacagggttaagttgagaaaaggcccc 
                     <0-----[153718:15671-0>ctaaaatgaatctcctaaccaccaca 
                                            tcatacttatatgttgtaatatagct 


SPP00000020_1.0  205 YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 
                     +HH+HHHNHGHQHLGSSELS+N+QPGAP+APTH   P LHHHHKHKGQH 
                     HHHKHHHNHGHQHLGSSELSKNEQPGAPDAPTHLTSPDLHHHHKHKGQH 
gi|357434243|g156794 cccacccacgccccgaagctaagccggcggcaccatcgcccccacagcc 
                     aaaaaaaaagaaatgggatcaaaacgccacccatcccataaaaaaagaa 
                     cttgttcttatgctcctgtagtgaaaaattttttttacttcctgcgtat 


SPP00000020_1.0  254 RQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSXCC 
                     RQGHPEN  MP SE LQ  Q KL +KRCINQLL KLP DSELAPRS    
                     RQGHPENXYMPGSEGLQHPQNKLXQKRCINQLLXKLPKDSELAPRS!A! 
gi|357434243|g156941 acgccgattacgaggtccccaactcaataactctatcagtgtgcaa4g2 
                     gagacaagatcggagtaacaaatgaaggtaattgatcaacatccgg c  
                     agtcagcacgaatataataacgcaagatataacaagcataggttgc t  


SPP00000020_1.0  303 HCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENITESCQ        
                     HCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEE ITESCQ        
                     HCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEETITESCQ        
gi|357434243|g157088 ctcccatgaagtgaatctagacctttatcgccgggaaagttc        
                     aggatttaacgcctcgagaaatcctgggagtgcaactcacga        
                     ttatgataaggtaccagtaaccacatcagatgaggtatattg        


//
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|357434243|gb|JH378120.1|:subseq(24855656,307324).pep
MWRSLGLALALCLLPAGGTESQDQSSLCKQPPAWNIRDQDPMLNSSGSVTVVALLQASXY
LCILQASRLEDLRVKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQEENQ
PDVWALLNGNKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL
KDEDFCKNVSLATVNKTTEAPQPHHHHKHHHNHGHQHLGSSELSKNEQPGAPDAPTHLTS
PDLHHHHKHKGQHRQGHPENXYMPGSEGLQHPQNKLXQKRCINQLLXKLPKDSELAPRSX
AXHCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEETITESCQ
//
>gi|357434243|gb|JH378120.1|:subseq(24855656,307324).[150000:157078].sp
ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTCCTCCCCGCAGGAGGAACAGAG
AGCCAGGACCAAAGCTCCTTGTGTAAGCAACCCCCAGCCTGGAACATAAGAGATCAAGAT
CCAATGCTGAACTCCAGTGGTTCAGTGACTGTGGTTGCTCTCCTTCAAGCAAGCTGATAC
CTGTGCATTCTGCAGGCATCTAGATTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGA
TATTCTAATATTTCTTATATTATTGTTAATCATCAAGGACTCTCTTCTCAATTAAGATAC
ACACATCTTAAGAATCAGGTTTCAGAGCATATTCCTGTTTATCAGCAAGAAGAAAACCAA
CCAGATGTCTGGGCTCTTTTAAATGGAAACAAAGATGACTTCCTTATATATGACAGATGT
GGCCGTCTTGTGTATCATCTTGGTTTGCCTTTTTCCTTCCTAACATTCCCATATGTAGAA
GAAGCCATTAAGATTGCCTACTGTGAAAAGAAATGTGGAAACTGCTCTCTCACGACTCTC
AAAGATGAAGACTTTTGTAAAAATGTATCTTTGGCTACTGTGAATAAAACAACTGAAGCT
CCACAGCCCCATCACCATCATAAGCATCATCACAATCATGGACATCAGCACCTTGGCAGC
AGTGAGCTTTCAAAGAATGAGCAACCAGGAGCACCAGATGCTCCTACTCATCTTACTTCT
CCAGACCTTCATCACCACCATAAGCACAAGGGTCAACATAGACAGGGTCACCCAGAGAAC
TGATACATGCCAGGAAGTGAAGGTTTACAACATCCACAAAACAAGCTCTGACAAAAGAGA
TGTATAAATCAATTACTCTGAAAATTGCCCAAAGATTCAGAGTTGGCTCCTAGGAGC
>gi|357434243|gb|JH378120.1|:subseq(24855656,307324).[157083:157085].sp
GCT
>gi|357434243|gb|JH378120.1|:subseq(24855656,307324).[157088:157213].sp
CATTGTCGACATCTGATATTTGAAAAAACGGGGTCTGCAATCACCTGACAGTGTAAAGAA
AACCTCCCATCCTTATGTAGCTGACAGGGACTTCGGGCAGAGGAGACTATAACTGAATCT
TGTCAG
//
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	match	150000	157078	512.53	+	.	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	cds	150000	150202	0.00	+	0	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	intron	150203	151264	0.00	+	.	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	cds	151265	151477	0.00	+	1	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	intron	151478	153599	0.00	+	.	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	cds	153600	153717	0.00	+	1	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	intron	153718	156715	0.00	+	.	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	cds	156716	157078	0.00	+	0	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-1
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	match	157083	157085	-17.05	+	.	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-2
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	cds	157083	157085	0.00	+	0	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-2
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	match	157088	157213	55.37	+	.	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-3
gi|357434243|gb|JH378120.1|:subseq(24855656,307324)	GeneWise	cds	157088	157213	0.00	+	0	gi|357434243|gb|JH378120.1|:subseq(24855656,307324)-genewise-prediction-3
//