genewise output
Score 166.71 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000017_1.0   55 EVKAFVTQDIPF                          HNLVMKHLPGA 
                     +VKAFVTQDIPF                          HNLVMKHLPGA 
                     QVKAFVTQDIPF           Y:Y[tac]       HNLVMKHLPGA 
gi|357434157|g149408 cgagtgacgactTAGTATCCT  Intron 1   CAGCcacgaacccgg 
                     atacttcaatct  <2-----[149446:15011-2> aatttaatcgc 
                     gggtcctgctac                          ccgggacccgc 


SPP00000017_1.0   79 DPELVLLGRRYEELE                       RIPLSEMTREE 
                     DPELVLLGRR+EELE                       RIPLSEMTR E 
                     DPELVLLGRRHEELE                       RIPLSEMTRAE 
gi|357434157|g150150 gcgcgccgcccggcgGTGAGGC  Intron 2   CAGcaccagaacgg 
                     acattttgggaaata<0-----[150195:15027-0>gtctgatcgca 
                     ccgcgggccccgagg                       ctgccagccag 


SPP00000017_1.0  105 INALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHADL         
                     INALVQELGFYRKAAPDAQVPPEYVWAP++PPE TSDHADL         
                     INALVQELGFYRKAAPDAQVPPEYVWAPSRPPEGTSDHADL         
gi|357434157|g150307 aagcgcgcgttcaggcggcgccgtgtgctaccggatgcggc         
                     tacttaatgtagacccacatccaatgcccgccagccaacat         
                     ccgggggcccccgggccgggccgcgggctgcggatgcctcg         


//
Making a Y in phase 2 intron
>gi|357434157|gb|JH378206.1|:subseq(489126,300429).pep
QVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRHEELERIPLSEMTRAEINALVQELGF
YRKAAPDAQVPPEYVWAPSRPPEGTSDHADL
//
>gi|357434157|gb|JH378206.1|:subseq(489126,300429).[149408:150429].sp
CAGGTGAAGGCTTTCGTCACTCAGGACATTCCATTCTACCACAACCTGGTGATGAAACAC
CTCCCCGGGGCCGACCCCGAGCTCGTGCTGCTGGGCCGCCGCCACGAGGAACTGGAGCGC
ATTCCGCTCAGCGAAATGACCCGCGCAGAGATCAACGCGCTGGTGCAGGAGCTCGGCTTC
TACCGCAAGGCGGCGCCCGACGCGCAGGTGCCCCCCGAGTACGTGTGGGCGCCCTCTAGG
CCCCCGGAGGGAACTTCGGACCACGCTGACCTG
//
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	GeneWise	match	149408	150429	166.71	+	.	gi|357434157|gb|JH378206.1|:subseq(489126,300429)-genewise-prediction-1
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	GeneWise	cds	149408	149445	0.00	+	0	gi|357434157|gb|JH378206.1|:subseq(489126,300429)-genewise-prediction-1
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	GeneWise	intron	149446	150115	0.00	+	.	gi|357434157|gb|JH378206.1|:subseq(489126,300429)-genewise-prediction-1
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	GeneWise	cds	150116	150194	0.00	+	1	gi|357434157|gb|JH378206.1|:subseq(489126,300429)-genewise-prediction-1
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	GeneWise	intron	150195	150273	0.00	+	.	gi|357434157|gb|JH378206.1|:subseq(489126,300429)-genewise-prediction-1
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	GeneWise	cds	150274	150429	0.00	+	0	gi|357434157|gb|JH378206.1|:subseq(489126,300429)-genewise-prediction-1
//