genewise output
Score 179.47 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000016_1.0    3 YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL                
                     ++S GQVLDSR+QSPWRLSLITDFFWGIAEFVVL                
                     FLSVGQVLDSRNQSPWRLSLITDFFWGIAEFVVL                
gi|357434173|g150000 tttggcgtgacactctatttaagtttgaggtggt                
                     ttctgattaggaaccggtcttcattggtcatttt                
                     cgtaagggccgtgtagaatgaatccgaatgtgta                


SPP00000016_1.0   37                           FKTLLQQDVKKRRSYGNSSDSRY 
                                               FKTLLQQDVKKRRSYGNSSDSRY 
                                F:F[ttt]       FKTLLQQDVKKRRSYGNSSDSRY 
gi|357434173|g150102 TTGTAAGTA  Intron 1   CAGTtaaccccggaaaaatgattgtat 
                       <2-----[150104:15156-2> tacttaaataagggagaccacga 
                                               cacgtgacgaaaactacagtcat 


SPP00000016_1.0   61 DDGR                          PPGNPPRRMGRINHLRGPS 
                     DDGR                          PPGNPPRRMGRINHL GPS 
                     DDGR           G:G[ggg]       PPGNPPRRMGRINHLHGPS 
gi|357434173|g151632 gggaGGGTACAGC  Intron 2   TAGGccgacccaagaaacccgca 
                     aagg  <2-----[151646:15228-2> ccgaccggtggtaatagcg 
                     ttaa                          gaactcaagtacttgtcct 


SPP00000016_1.0   85 PPPMAGG                                           
                     PPPMAGG                                           
                     PPPMAGG                                           
gi|357434173|g152339 cccaggg                                           
                     ccctcgg                                           
                     ttagtta                                           


//
Making a F in phase 2 intron
Making a G in phase 2 intron
>gi|357434173|gb|JH378190.1|:subseq(4296395,301637).pep
FLSVGQVLDSRNQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDD
GRGPPGNPPRRMGRINHLHGPSPPPMAGG
//
>gi|357434173|gb|JH378190.1|:subseq(4296395,301637).[150000:152359].sp
TTCTTGTCTGTAGGACAGGTGTTGGACAGCCGGAATCAGTCTCCATGGAGATTATCTTTG
ATAACAGATTTCTTCTGGGGAATAGCTGAGTTTGTGGTTTTATTTTTCAAAACCCTGCTT
CAGCAAGACGTGAAAAAAAGAAGAAGCTATGGAAACTCATCGGATTCCAGATATGATGAT
GGAAGAGGGCCGCCAGGAAACCCTCCCCGAAGAATGGGTAGAATCAATCATCTGCATGGC
CCCAGTCCTCCTCCAATGGCTGGTGGA
//
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	GeneWise	match	150000	152359	179.47	+	.	gi|357434173|gb|JH378190.1|:subseq(4296395,301637)-genewise-prediction-1
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	GeneWise	cds	150000	150103	0.00	+	0	gi|357434173|gb|JH378190.1|:subseq(4296395,301637)-genewise-prediction-1
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	GeneWise	intron	150104	151561	0.00	+	.	gi|357434173|gb|JH378190.1|:subseq(4296395,301637)-genewise-prediction-1
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	GeneWise	cds	151562	151645	0.00	+	1	gi|357434173|gb|JH378190.1|:subseq(4296395,301637)-genewise-prediction-1
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	GeneWise	intron	151646	152280	0.00	+	.	gi|357434173|gb|JH378190.1|:subseq(4296395,301637)-genewise-prediction-1
gi|357434173|gb|JH378190.1|:subseq(4296395,301637)	GeneWise	cds	152281	152359	0.00	+	1	gi|357434173|gb|JH378190.1|:subseq(4296395,301637)-genewise-prediction-1
//