genewise output
Score 193.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000013_1.0    1 MVAMAAGPSGCLVPAFGLRLLLATVLQA                      
                     +VAMAAGP G L+PAF LRLL AT+LQ                       
                     VVAMAAGPGGWLLPAFQLRLLFATLLQV                      
gi|357434081|g150000 gggagggcggtctcgtccctttgatccgGTGAGTG  Intron 1     
                     ttctccgcgggttcctatgtttccttat<0-----[150084:160823 
                     gagggtggtggggggtgagggcgtatag                      


SPP00000013_1.0   29    VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC 
                         SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC 
                        GSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCC 
gi|357434081|g160821 CAGgtgtgggtttggtagtgttaatctattgccgctaccccgcgtagtt 
                     -0>gcctgcatccacggatgtcgattggcgattgatattatacaggggg 
                        gtttgagtatgacagacctccgcccttttcagccgtggtctcaact 


SPP00000013_1.0   75 QEEAQFETKK                       LYAGAILEVCGXKLGR 
                     QEEAQFETKK                       LYAGAILEVCGXKLGR 
                     QEEAQFETKK                       LYAGAILEVCGXKLGR 
gi|357434081|g160962 cgggctgaaaGTACTGT  Intron 2   TAGctgggacggtgtatga 
                     aaacatacaa<0-----[160992:17078-0>tacgcttatgggatgg 
                     gaaaatacag                       gtaatttattaaagag 


SPP00000013_1.0  101 FPQVQ                          CPWFRPCIKAFGRQWEHC 
                     FPQVQ                          CP FR C+KAFGRQWEHC 
                     FPQVQ          V:V[gta]        CPRFRSCFKAFGRQWEHC 
gi|357434081|g170829 tccgcGGTATATA  Intron 3   TAGTAtcatatttagtgcctgct 
                     tcata <1-----[170845:18925-1>  gcgtgcgtactggagaag 
                     ctaca                          tggcacttattaaagatc 


//
Making a V in phase 1 intron
>gi|357434081|gb|JH378282.1|:subseq(2683177,311009).pep
VVAMAAGPGGWLLPAFQLRLLFATLLQVGSAFGAEFSSEACRELGFSSNLLCSSCDLLGQ
FNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQVCPRFRSCFKAFGRQ
WEHC
//
>gi|357434081|gb|JH378282.1|:subseq(2683177,311009).[150000:189309].sp
GTGGTAGCGATGGCGGCTGGGCCGGGTGGGTGGCTGTTGCCGGCGTTTCAGCTACGGTTG
TTGTTCGCGACTTTACTTCAAGTGGGGTCTGCTTTTGGGGCAGAGTTTTCATCTGAGGCA
TGCAGAGAGTTAGGCTTCTCTAGCAACTTGCTCTGCAGCTCTTGTGATCTTCTCGGACAG
TTCAACCTGCTTCAGCTGGATCCCGATTGCAGAGGATGCTGTCAGGAAGAAGCACAATTT
GAAACCAAAAAGCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGG
TTCCCTCAAGTCCAAGTATGTCCGAGGTTCAGATCCTGTTTTAAAGCTTTTGGACGACAA
TGGGAACATTGC
//
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	match	150000	189309	193.73	+	.	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	cds	150000	150083	0.00	+	0	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	intron	150084	160823	0.00	+	.	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	cds	160824	160991	0.00	+	0	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	intron	160992	170780	0.00	+	.	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	cds	170781	170844	0.00	+	0	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	intron	170845	189253	0.00	+	.	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
gi|357434081|gb|JH378282.1|:subseq(2683177,311009)	GeneWise	cds	189254	189309	0.00	+	2	gi|357434081|gb|JH378282.1|:subseq(2683177,311009)-genewise-prediction-1
//