genewise output
Score 472.03 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000012_1.0    1 MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVA   
                     MLSATRRA QLL  HSLFPVPRMG+SAS IVSPQEALPGRKE TPVA   
                     MLSATRRARQLL--HSLFPVPRMGDSASKIVSPQEALPGRKEPTPVA   
gi|357434168|g150000 actgacagcccc  cactcgcaaggtgtaagaccggtcgcagcacgg   
                     ttcccggcgatt  agttctcgtgacccattgcaactcggaaccctc   
                     gggcgggtcacc  ccctacgggccgaggccccggcggcggggcaag   


SPP00000012_1.0   48                           KHHVNGNRTVEPFPEGTQMAVF  
                                               KHHVNGNRTVEPFPEGTQMA+F  
                               A:A[gcc]        KHHVNGNRTVEPFPEGTQMAIF  
gi|357434168|g150135 GGTAAGCA  Intron 1   TAGCCaccgagaaaggctcggacagat  
                      <1-----[150136:30426-1>  aaatagagctactcagcatctt  
                                               attctccaacatcagaaggtat  


SPP00000012_1.0   71                           MGCFWGAERKFWVLKGVYSTQVG 
                                               MGCFWGAERKFW LKGVYSTQVG 
                               G:G[gga]        MGCFWGAERKFWALKGVYSTQVG 
gi|357434168|g304334 GGTAAGAT  Intron 2   AAGGAagtttgggaattgtaggttacgg 
                      <1-----[304335:34122-1>  tggtggcagatgctagtaccatg 
                                               gctcgatagacgcgaaatatatt 


SPP00000012_1.0   95 FAGGYTSNPTYKEVCS                          KTGHAEV 
                     FAGGYTSNPTYKEVCS                          KTGHAEV 
                     FAGGYTSNPTYKEVCS          E:E[gaa]        KTGHAEV 
gi|357434168|g341296 tgggtatacataggttGGTAGGAA  Intron 3   AAGAAaagcggg 
                     tcggaccaccaaatgc <1-----[341345:39553-1>  acgacat 
                     taagctattttaacca                          atctaac 


SPP00000012_1.0  119 VRVVYQPEHMSFEELLKVFWENHDPTQ                       
                     VRVVYQPEH+SFEELLKVFWENHDPTQ                       
                     VRVVYQPEHISFEELLKVFWENHDPTQ          G:G[ggt]     
gi|357434168|g395560 gcggtccgcaatggccagttgacgcacGGTAGAGT  Intron 4     
                     tgttaacaatgtaattattgaaaacca <1-----[395642:413996 
                     catgcgaaccttgagcgccggtccgca                       


SPP00000012_1.0  146      MRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQK          
                          MRQGNDHGTQYRSAIYPTSAKQMEAALSSKE+YQK          
                          MRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQK          
gi|357434168|g413994 CAGGTaccgagcgactctgatcatgacagggcataggtca          
                     -1>  tgagaaagcaagcctaccccaatacctgcaaaaaa          
                          gcgccccctgccacccacccggggacgccagccgg          


SPP00000012_1.0  182                        VLSEHGFGPITTDIREGQTFYYAEDY 
                                            VLSEHGFGPITTDIRE QTFYYAEDY 
                                            VLSEHGFGPITTDIRERQTFYYAEDY 
gi|357434168|g414104 GTAGGGG  Intron 5   CAGgctgcgtgcaaagacgacatttgggt 
                     <0-----[414104:52775-0>ttcaagtgctccatgagactaacaaa 
                                            tttgcctccctcccggagtcccgacc 


SPP00000012_1.0  208 HQQYLSKNPNGYCGLGGTGVSCPVGIKK                      
                     HQQYLSKNP+GYCGLGGTGVSCP+GIKK                      
                     HQQYLSKNPHGYCGLGGTGVSCPMGIKK                      
gi|357434168|g527837 ccctcaaaccgttgcggaggttcagaaa                      
                     aaaatgaacagaggtggcgtcgctgtaa                      
                     cggcgcgcccccccggcccgccagttaa                      


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|357434168|gb|JH378195.1|:subseq(8562110,586247).pep
MLSATRRARQLLHSLFPVPRMGDSASKIVSPQEALPGRKEPTPVAAKHHVNGNRTVEPFP
EGTQMAIFGMGCFWGAERKFWALKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVV
YQPEHISFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQKV
LSEHGFGPITTDIRERQTFYYAEDYHQQYLSKNPHGYCGLGGTGVSCPMGIKK
//
>gi|357434168|gb|JH378195.1|:subseq(8562110,586247).[150000:527920].sp
ATGCTGTCGGCCACGCGGAGGGCTCGCCAACTCCTCCACAGCCTCTTTCCAGTCCCGAGG
ATGGGCGACTCGGCATCGAAGATCGTCAGCCCCCAGGAGGCCTTGCCGGGCCGGAAGGAG
CCGACCCCAGTAGCGGCCAAACATCATGTCAATGGCAACAGAACAGTCGAACCTTTCCCA
GAGGGAACACAGATGGCTATATTTGGAATGGGCTGTTTCTGGGGAGCTGAAAGGAAATTC
TGGGCCTTGAAAGGAGTATATTCAACTCAAGTTGGTTTTGCAGGAGGGTACACTTCAAAT
CCTACTTATAAAGAAGTCTGCTCAGAAAAAACTGGCCATGCAGAAGTCGTCCGAGTTGTG
TACCAGCCAGAACACATCAGTTTTGAGGAACTGCTCAAGGTCTTCTGGGAGAATCACGAC
CCGACCCAAGGTATGCGCCAGGGCAACGACCACGGCACTCAGTACCGCTCAGCCATCTAC
CCAACCTCCGCCAAGCAGATGGAGGCAGCCCTGAGCTCCAAAGAGGACTACCAGAAGGTT
CTTTCTGAGCACGGCTTTGGCCCCATCACTACCGACATCCGGGAGAGACAGACTTTCTAC
TACGCGGAAGACTACCACCAGCAGTACCTGAGCAAGAACCCCCACGGCTACTGCGGCCTG
GGGGGCACCGGCGTGTCCTGCCCAATGGGTATTAAAAAA
//
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	match	150000	527920	473.03	+	.	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	cds	150000	150135	0.00	+	0	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	intron	150136	304265	0.00	+	.	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	cds	304266	304334	0.00	+	2	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	intron	304335	341224	0.00	+	.	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	cds	341225	341344	0.00	+	2	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	intron	341345	395536	0.00	+	.	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	cds	395537	395641	0.00	+	2	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	intron	395642	413996	0.00	+	.	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	cds	413997	414103	0.00	+	2	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	intron	414104	527758	0.00	+	.	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
gi|357434168|gb|JH378195.1|:subseq(8562110,586247)	GeneWise	cds	527759	527920	0.00	+	0	gi|357434168|gb|JH378195.1|:subseq(8562110,586247)-genewise-prediction-1
//