genewise output
Score 403.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000009_1.0    1 MFQQFQASCLVLFFLVGFAQQTLKPQNRK                     
                     M++ FQASCLV +FLV FAQQTLK ++RK                     
                     MIRHFQASCLVPLFLVSFAQQTLKSEDRK                     
gi|357434034|g125234 aacctcgttcgcttcgatgccacatggaaGTAAGCA  Intron 1    
                     ttgataccgttcttttgtcaactacaaga<0-----[125321:128749
                     gcgccgccttcggcgtcttggcagtatgg                     


SPP00000009_1.0   30    VDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGL 
                        VDCN  VTGTIYEYGA TL+GE YIQFKQFAGK +LFVNVA Y GL 
                        VDCNNNVTGTIYEYGAFTLSGEGYIQFKQFAGKPILFVNVATYCGL 
gi|357434034|g128747 CAGggtaaagagaatgtggtacagggtactactggacactgaggattgt 
                     -0>tagaaatcgctaaagctctggagatataatcgacttttatccaggt 
                        gtccccgaccctgtaccccccggccgcggtacgccgtctacccccg 


SPP00000009_1.0   76 AAQYP                          LNALQEELKNFGVIVLAF 
                      AQYP                          LNALQEELK++GVIVL F 
                     TAQYP          E:E[gaa]        LNALQEELKSLGVIVLGF 
gi|357434034|g128888 agctcGGTAAGAA  Intron 2   CAGAAcagccggcaacggagcgt 
                     ccaac <1-----[128904:13344-1>  tactaaatagtgttttgt 
                     atgtt                          gtacgggggctactggct 


SPP00000009_1.0  100 PCNQFGKQEPGTNSEILLGL                          YVC 
                     PCNQFGKQEPG NSEILLGL                          YV  
                     PCNQFGKQEPGANSEILLGL           K:K[aag]       YVR 
gi|357434034|g133502 ctactgacgcggatgaccgcAAGTGAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgcacatttgt  <2-----[133564:13405-2> atg 
                     cccgtaaaaaaacagatttc                          tgt 


SPP00000009_1.0  124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFLK                    
                     PGSGFVP+FQLFEKGDVNGEKEQKVFTFLK                    
                     PGSGFVPNFQLFEKGDVNGEKEQKVFTFLK                    
gi|357434034|g134069 cgagtgcatcctgagggaggagcagtatca                    
                     cgggttcatattaagatagaaaaattctta                    
                     atcctactcgctgagtgtaaaaggcttcgg                    


SPP00000009_1.0  154                        NSCPPTSDLLGSSSQLFWEPMKVHDI 
                                            N+CPPTSDLLGSS+QLFWEPMKVHDI 
                                            NACPPTSDLLGSSNQLFWEPMKVHDI 
gi|357434034|g134159 GTGAGTA  Intron 4   CAGagtccatgctgttaccttgcaagcga 
                     <0-----[134159:13558-0>acgccccattgccaattgactataat 
                                            ccctgctttgcaacaccggtgactcc 


SPP00000009_1.0  180 RWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK             
                     RWNFEKFLVGP GVPVM WFH+ PVSTVKSDIL YLK             
                     RWNFEKFLVGPHGVPVMRWFHRIPVSTVKSDILAYLK             
gi|357434034|g135659 ctatgatcggccggcgacttccacgaagatgacgtca             
                     ggataatttgcagtcttggtagtctgctacattcata             
                     cgctaatgtgctactcgcgccttaccacgaccggcag             


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|357434034|gb|JH378329.1|:subseq(1,330527).pep
MIRHFQASCLVPLFLVSFAQQTLKSEDRKVDCNNNVTGTIYEYGAFTLSGEGYIQFKQFA
GKPILFVNVATYCGLTAQYPELNALQEELKSLGVIVLGFPCNQFGKQEPGANSEILLGLK
YVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLKNACPPTSDLLGSSNQLFWEPMKVHDIR
WNFEKFLVGPHGVPVMRWFHRIPVSTVKSDILAYLK
//
>gi|357434034|gb|JH378329.1|:subseq(1,330527).[125234:135769].sp
ATGATCCGGCACTTCCAGGCCTCCTGTCTTGTCCCGTTGTTCCTGGTTAGCTTTGCTCAG
CAGACCCTAAAGTCTGAAGATAGGAAGGTGGATTGCAACAACAACGTGACAGGCACCATC
TATGAGTATGGAGCCTTCACCCTCAGCGGCGAGGGGTACATCCAGTTCAAGCAGTTTGCA
GGCAAGCCCATCCTGTTTGTCAATGTAGCCACCTACTGCGGCTTGACAGCTCAGTATCCT
GAACTGAATGCACTCCAGGAGGAGCTGAAGAGCCTTGGAGTCATTGTGCTGGGCTTTCCC
TGCAACCAGTTTGGAAAACAAGAACCAGGAGCAAACTCAGAGATACTTCTTGGTCTCAAG
TATGTGCGTCCAGGTAGCGGCTTTGTACCCAATTTCCAGCTCTTTGAGAAAGGGGATGTG
AATGGAGAAAAAGAACAGAAGGTCTTTACTTTCCTGAAGAACGCCTGCCCTCCGACCTCT
GATCTTTTGGGCTCATCAAACCAACTCTTCTGGGAGCCTATGAAAGTCCATGACATCCGC
TGGAACTTTGAAAAATTTCTGGTTGGGCCCCATGGAGTCCCTGTCATGCGCTGGTTCCAC
CGTATTCCAGTCAGCACAGTCAAGTCAGACATCCTGGCGTACCTAAAG
//
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	match	125234	135769	403.74	+	.	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	cds	125234	125320	0.00	+	0	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	intron	125321	128749	0.00	+	.	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	cds	128750	128903	0.00	+	0	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	intron	128904	133445	0.00	+	.	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	cds	133446	133563	0.00	+	2	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	intron	133564	134058	0.00	+	.	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	cds	134059	134158	0.00	+	1	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	intron	134159	135580	0.00	+	.	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
gi|357434034|gb|JH378329.1|:subseq(1,330527)	GeneWise	cds	135581	135769	0.00	+	0	gi|357434034|gb|JH378329.1|:subseq(1,330527)-genewise-prediction-1
//