genewise output
Score 369.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000007_1.0    1 MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     MSLGRLCRLLKPALLCGALAAPGLAGTM                      
gi|357434043|g148601 aacgcctctcacgcctggcggcgcggaaGTAAGCG  Intron 1     
                     tgtggtggttaccttggctcccgtcgct<0-----[148685:149999 
                     gcctcgccggggggctgtgcgccgcccg                      


SPP00000007_1.0   29    CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
gi|357434043|g149997 CAGtgtcggtctgctacgttgagaggcagacgat                
                     -0>gccgaagggcgctaatccaatagattataaa                
                        cgcgccgctgccgcgtccgcccgcgtcgcgc                


SPP00000007_1.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCIVTNVASQXGKTEVNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTEVNYTQL 
gi|357434043|g150093 CGGTGGGTG  Intron 2   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[150095:15016-2> gttgttcatccaggacataacat 
                                               ccgcccccgccgacacagcctgt 


SPP00000007_1.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
gi|357434043|g150239 ggccgctggtgtcacgtctactgacGTGGGCG  Intron 3   CAGg 
                     tatacgacaggtgttctcgaatgaa<0-----[150314:15046-0>a 
                     ccgccaccgttggcgcccccgcggg                       g 


SPP00000007_1.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
gi|357434043|g150467 cgaaggaagtgggtagatgataaatgaggggccctataaaccagagacg 
                     cggaaataatccgaatatattgatgtagaacactgagtatacagagttg 
                     agccagcaacctctccaccgccgccgtgtcccgggggggcgcgcgccga 


SPP00000007_1.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
gi|357434043|g150614 AAGTGCGTG  Intron 4   CAGTgaatataa                
                       <2-----[150616:15087-2> ctagatca                
                                               ccggcccg                


SPP00000007_1.0  168                        FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEP        
                                            FLIDKNGCVVKRYGPMEEPQ       
gi|357434043|g150901 GTGAGGG  Intron 5   CAGtcagaagtggactgcaggcc       
                     <0-----[150901:15102-0>tttaaaggttagagctaaca       
                                            tcccgtctggggcacggacg       


SPP00000007_1.0  188                        VIEKDLPHYF                 
                                            VIEKDLPHYF                 
                                            VIEKDLPHYF                 
gi|357434043|g151082 GTACGTC  Intron 6   CAGgagagccctt                 
                     <0-----[151082:15115-0>ttaaatcaat                 
                                            gaggcgcctc                 


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>gi|357434043|gb|JH378320.1|:subseq(185081,301187).pep
MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR
GFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA
AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY
GPMEEPQVIEKDLPHYF
//
>gi|357434043|gb|JH378320.1|:subseq(185081,301187).[148601:151187].sp
ATGAGCCTCGGTCGCCTGTGCCGCTTGCTGAAGCCGGCGCTGCTCTGTGGGGCTCTGGCC
GCGCCCGGCCTGGCCGGCACCATGTGCGCGTCCCGGGACGACTGGCGCTGTGCGCGCTCC
ATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACATGGTTAACCTGGACAAGTACCGG
GGCTTCGTGTGCATCGTCACCAACGTGGCCTCCCAGTGAGGCAAAACCGAAGTGAACTAC
ACTCAGCTTGTCGACCTGCACGCCCGATACGCCGAGTGTGGTTTGCGGATCCTGGCCTTC
CCCTGCAACCAGTTCGGGAAGCAGGAGCCAGGGAGCAACGAAGAGATCAAAGAATTCGCC
GCTGGCTATAACGTCAAATTCGACATGTTCAGCAAGATCTGCGTGAATGGGGATGACGCC
CACCCGCTGTGGAAGTGGATGAAGATCCAGCCCAAGGGCAAGGGCATCCTGGGAAATGCC
ATCAAGTGGAACTTCACCAAGTTTCTCATCGACAAGAATGGCTGTGTGGTGAAGCGGTAC
GGACCCATGGAGGAACCCCAGGTGATAGAGAAGGACCTGCCCCACTATTTC
//
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	match	148601	151187	369.61	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	148601	148684	0.00	+	0	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	intron	148685	149999	0.00	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	150000	150094	0.00	+	0	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	intron	150095	150168	0.00	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	150169	150313	0.00	+	1	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	intron	150314	150463	0.00	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	150464	150615	0.00	+	0	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	intron	150616	150875	0.00	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	150876	150900	0.00	+	1	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	intron	150901	151021	0.00	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	151022	151081	0.00	+	0	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	intron	151082	151157	0.00	+	.	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	GeneWise	cds	151158	151187	0.00	+	0	gi|357434043|gb|JH378320.1|:subseq(185081,301187)-genewise-prediction-1
//