Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000036_1.0.fa -t ./exonerate/SPP00000036_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete
        Target: gi|357434057|gb|JH378306.1|:subseq(903858,334727) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00202, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2720
   Query range: 191 -> 754
  Target range: 148916 -> 185310

    192 : ArgValLysGluLeuPheSerSerLeuGlyValGluCysAsnValLeuGluLeuAspG :    211
          !:!|||||||||||||||||||||||||||..!|||||| !!||||||||||||||||
          GlnValLysGluLeuPheSerSerLeuGlyThrGluCysTyrValLeuGluLeuAspG
 148917 : CAGGTGAAAGAACTCTTTTCTTCTTTGGGAACTGAATGTTATGTCTTGGAACTTGATC : 148974

    212 : lnVal{A}  >>>> Target Intron 1 >>>>  {sp}AspGlyAlaArgValGl :    219
          |||||{|}           1023 bp           {||}|||||||||!:!:!!||
          lnVal{A}++                         ++{sp}AspGlyAlaLysIleGl
 148975 : AAGTT{G}gt.........................ag{AT}GATGGGGCCAAGATTCA : 150021

    220 : nGluValLeuSerGluIleThrAsnGlnLysThrValProAsnIlePheValAsnLys :    238
          ||||||||||! !|||||||||||||||||||||||||||||||||||||||||||||
          nGluValLeuLeuGluIleThrAsnGlnLysThrValProAsnIlePheValAsnLys
 150022 : AGAAGTGCTGTTAGAAATCACTAATCAGAAAACCGTGCCCAATATTTTTGTGAATAAA : 150078

    239 : ValHisValGlyGlyCysAspGlnThrPheGln  >>>> Target Intron 2 >> :    250
          |||||||||||||||||||||||||||||||||           1728 bp       
          ValHisValGlyGlyCysAspGlnThrPheGln++                       
 150079 : GTGCATGTTGGTGGATGTGACCAAACTTTCCAGgt....................... : 150116

    251 : >>  AlaTyrGlnSerGlyLeuLeuGlnLysLeuLeuGlnGluAspLeuAlaTyrAsp :    267
              |||||||||||||||||||||||||||||||||!!.||||||! !|||||||||
            ++AlaTyrGlnSerGlyLeuLeuGlnLysLeuLeuHisGluAspSerAlaTyrAsp
 150117 : ..agGCATATCAGAGTGGTTTGTTGCAAAAGCTCCTTCACGAAGATTCGGCATATGAT : 151893

    268 : TyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeuSerCysAlaLys  >>>>  :    285
          ||||||||||||:!!||||||||||||||||||||||||||||||||||||       
          TyrAspLeuIleValIleGlyGlyGlySerGlyGlyLeuSerCysAlaLys++     
 151894 : TATGATCTGATCGTCATCGGTGGTGGTTCTGGTGGCCTTTCGTGTGCAAAGgt..... : 151949

    286 : Target Intron 3 >>>>  GluAlaAlaIleLeuGlyLysLysValMetValLeu :    296
               246 bp           ||||||||||||||||||||||||||||||||||||
                              ++GluAlaAlaIleLeuGlyLysLysValMetValLeu
 151950 : ....................agGAAGCTGCCATTTTGGGAAAGAAAGTTATGGTTCTA : 152226

    297 : AspPheValValProSerProGlnGlyThrSerTrp{G}  >>>> Target Intro :    309
          ||||||||||||||||||||||||||||||!!!|||{|}            747 bp 
          AspPheValValProSerProGlnGlyThrCysTrp{G}++                 
 152227 : GACTTTGTTGTCCCGTCACCTCAGGGCACGTGCTGG{G}gt................. : 152268

    310 : n 4 >>>>  {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLe :    324
                    {||}||||||||||||||||||||||||||||||||||||||||||||
                  ++{ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLe
 152269 : ........ag{GT}CTTGGTGGCACTTGTGTAAATGTAGGTTGTATTCCTAAGAAATT : 153057

    325 : uMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCysAspSerArgLysPheGlyTrp :    343
          ||||||||||||||||||||||||||||||||||  !|||||||||||||||||||||
          uMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuHisAspSerArgLysPheGlyTrp
 153058 : GATGCATCAGGCTGCCCTTTTGGGGCAGGCATTACATGACTCAAGGAAGTTTGGCTGG : 153114

    344 : GluTyrAsnGlnGln{V}  >>>> Target Intron 5 >>>>  {al}ArgHisA :    352
          |||||||||||||||{|}           3051 bp           {||}!:!||||
          GluTyrAsnGlnGln{V}++                         ++{al}LysHisA
 153115 : GAGTATAATCAACAA{G}gt.........................ag{TG}AAGCACA : 156192

    353 : snTrpGluThrMetThrLysAlaIleGlnAsnHisIleSerSerLeuAsnTrpGlyTy :    371
          |||||||||||||||||||||||||||||||||||||| !!|||||||||!::|||||
          snTrpGluThrMetThrLysAlaIleGlnAsnHisIleArgSerLeuAsnPheGlyTy
 156193 : ACTGGGAGACGATGACAAAAGCAATTCAGAACCACATCCGCTCTCTAAACTTTGGCTA : 156249

    372 : rArgLeuSerLeuArgGluLysAlaValAlaTyrValAsnSerTyrGlyGluPheVal :    390
          | !!||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rGlyLeuSerLeuArgGluLysAlaValAlaTyrValAsnSerTyrGlyGluPheVal
 156250 : CGGGTTGTCTTTGAGGGAAAAGGCTGTGGCCTATGTCAATTCCTATGGAGAATTTGTT : 156306

    391 : GluHisHisLysIleLys  >>>> Target Intron 6 >>>>  AlaThrAsnLy :    400
          ||||||||||||||||||           3925 bp           |||||||||||
          GluHisHisLysIleLys++                         ++AlaThrAsnLy
 156307 : GAACATCACAAAATAAAGgt.........................agGCAACCAATAA : 160261

    401 : sLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGluArg :    419
          |!!.||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sAsnGlyGlnGluThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGluArg
 160262 : AAATGGACAGGAAACTTATTATACTGCTGCACAGTTTGTCATAGCAACGGGTGAAAGG : 160318

    420 : ProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCysIleThr{Se}  >>>> Ta :    435
          |||||||||||||||||||||||||||||||||||||||||||||{||}         
          ProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCysIleThr{Se}++       
 160319 : CCGCGGTATTTAGGAATCCAAGGAGATAAAGAATACTGTATTACC{AG}gt....... : 160370

    436 : rget Intron 7 >>>>  {r}AspAspLeuPheSerLeuProTyrCysProGlyLy :    447
             788 bp           {|}|||||||||||||||||||||||||||||||||||
                            ++{r}AspAspLeuPheSerLeuProTyrCysProGlyLy
 160371 : ..................ag{T}GATGACCTTTTTTCTCTGCCTTATTGCCCTGGCAA : 161190

    448 : sThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGly :    466
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGly
 161191 : AACGTTAGTGGTAGGTGCCTCTTACGTCGCCCTGGAGTGTGCAGGGTTTCTGGCTGGC : 161247

    467 : PheGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnG :    486
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          PheGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnG
 161248 : TTTGGCCTGGATGTCACAGTTATGGTACGCTCAATCCTTCTCCGTGGCTTTGACCAAG : 161307

    487 : luMetAlaGluLysValGlySerTyrMetGluGlnHisGlyValLysPheLeuArgLy :    505
          ||||||||||||||||||||||||||||||||||||||||||||!:!|||||| !!||
          luMetAlaGluLysValGlySerTyrMetGluGlnHisGlyValArgPheLeuTrpLy
 161308 : AAATGGCAGAGAAAGTGGGTTCCTACATGGAGCAGCATGGTGTGAGGTTCCTGTGGAA : 161364

    506 : sPheIleProValMet  >>>> Target Intron 8 >>>>  ValGlnGlnLeuG :    515
          ||||||||||||||||           1252 bp           |||||||||||||
          sPheIleProValMet++                         ++ValGlnGlnLeuG
 161365 : ATTCATACCTGTGATGgt.........................agGTTCAACAGTTGG : 162646

    516 : luLysGlySerProGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluTh :    534
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          luLysGlySerProGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluTh
 162647 : AGAAAGGTTCACCTGGAAAGCTGAAAGTATTGGCTAAATCTACTGAAGGAACAGAAAC : 162703

    535 : rIleGluGlyValTyrAsnThr  >>>> Target Intron 9 >>>>  ValLeuL :    544
          |||||||! !||||||||||||           7816 bp           |||||||
          rIleGluGluValTyrAsnThr++                         ++ValLeuL
 162704 : AATTGAAGAAGTCTATAACACAgt.........................agGTTTTGT : 170549

    545 : euAlaIleGlyArgAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLy :    563
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euAlaIleGlyArgAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLy
 170550 : TAGCTATTGGTCGTGACTCCTGTACAAGGAAAATAGGCTTGGAGAAGATTGGTGTCAA : 170606

    564 : sIleAsnGlu{Ly}  >>>> Target Intron 10 >>>>  {s}SerGlyLysIl :    571
          ||||||||||{||}            542 bp            {|}|||||||||||
          sIleAsnGlu{Ly}++                          ++{s}SerGlyLysIl
 170607 : AATTAATGAG{AA}gt..........................ag{A}AGTGGAAAAAT : 171172

    572 : eProValAsnAspValGluGlnThrAsnValProTyrValTyrAlaValGlyAspIle :    590
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eProValAsnAspValGluGlnThrAsnValProTyrValTyrAlaValGlyAspIle
 171173 : ACCTGTAAATGATGTGGAACAGACCAATGTGCCATATGTCTATGCTGTTGGGGATATT : 171229

    591 : LeuGluAspLysProGluLeuThrProValAlaIleGlnSerGlyLysLeuLeuAlaG :    610
          ||||||! !||||||||||||||||||||||||:!!|||||||||||||||||||||!
          LeuGluGlyLysProGluLeuThrProValAlaValGlnSerGlyLysLeuLeuAlaA
 171230 : TTGGAGGGTAAGCCAGAGCTCACTCCCGTCGCCGTACAGTCAGGCAAGCTGCTAGCTC : 171289

    611 : lnArgLeuPheGlyAlaSerLeuGluLys  >>>> Target Intron 11 >>>>  :    620
          :!|||||||||||||||||||||||||||            5975 bp          
          rgArgLeuPheGlyAlaSerLeuGluLys++                          +
 171290 : GGAGACTCTTTGGGGCCTCTTTAGAAAAGgt..........................a : 177292

    621 :  CysAspTyrIleAsnValProThrThrValPheThrProLeuGluTyrGlyCysCys :    638
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          +CysAspTyrIleAsnValProThrThrValPheThrProLeuGluTyrGlyCysCys
 177293 : gTGTGATTATATTAATGTTCCAACTACGGTGTTTACTCCTCTGGAGTATGGTTGCTGT : 177348

    639 : GlyLeuSerGluGluLysAlaIleGluValTyrLysLysGluAsnLeuGlu  >>>>  :    656
          |||||||||||||||||||||||||||:!!|||||||||||||||||||||       
          GlyLeuSerGluGluLysAlaIleGluIleTyrLysLysGluAsnLeuGlu++     
 177349 : GGATTATCTGAAGAGAAGGCTATTGAAATATATAAAAAAGAGAATCTAGAAgt..... : 177404

    657 : Target Intron 12 >>>>  IleTyrHisThrLeuPheTrpProLeuGluTrpTh :    667
               4466 bp           |||||||||||||||||||||||||||||||||||
                               ++IleTyrHisThrLeuPheTrpProLeuGluTrpTh
 177405 : .....................agATATATCATACTTTGTTCTGGCCTCTTGAATGGAC : 181901

    668 : rValAlaGlyArgGluAsnAsnThrCysTyrAlaLysIleIleCysAsnLysPheAsp :    686
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rValAlaGlyArgGluAsnAsnThrCysTyrAlaLysIleIleCysAsnLysPheAsp
 181902 : AGTAGCTGGCAGAGAGAACAACACTTGTTACGCAAAGATAATCTGCAATAAATTTGAC : 181958

    687 : His  >>>> Target Intron 13 >>>>  AspArgValIleGlyPheHisIleL :    696
          |||            2626 bp           |||||||||||||||||||||||||
          His++                          ++AspArgValIleGlyPheHisIleL
 181959 : CATgt..........................agGATCGGGTGATAGGGTTTCATATTC : 184614

    697 : euGlyProAsnAlaGlyGluValThrGlnGlyPheAlaAlaAlaMetLysCysGlyLe :    715
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euGlyProAsnAlaGlyGluValThrGlnGlyPheAlaAlaAlaMetLysCysGlyLe
 184615 : TTGGACCAAATGCCGGTGAGGTTACCCAAGGATTTGCAGCTGCAATGAAATGTGGGCT : 184671

    716 : uThrLysGlnLeuLeuAspAspThrIleGlyIleHisProThrCysGlyGlu  >>>> :    733
          ||||||||||||||||||||||||||||||||||||||||||||||||||||      
          uThrLysGlnLeuLeuAspAspThrIleGlyIleHisProThrCysGlyGlu++    
 184672 : CACTAAACAGCTACTTGATGACACCATTGGAATTCACCCCACATGTGGGGAGgt.... : 184727

    734 :  Target Intron 14 >>>>  ValPheThrThrLeuGluIleThrLysSerSerG :    744
                520 bp            ||||||||||||||||||||||||||||||||||
                                ++ValPheThrThrLeuGluIleThrLysSerSerG
 184728 : ......................agGTGTTCACGACTTTGGAAATCACAAAATCCTCGG : 185278

    745 : lyLeuAspIleThrGlnLysGlyCysUnkGly :    754
          ||||||||||||||||||||||||||   |||
          lyLeuAspIleThrGlnLysGlyCys***Gly
 185279 : GACTAGACATCACTCAGAAAGGCTGCTGAGGC : 185310

vulgar: SPP00000036_1.0 191 754 . gi|357434057|gb|JH378306.1|:subseq(903858,334727) 148916 185310 + 2720 M 21 63 S 0 1 5 0 2 I 0 1019 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1724 3 0 2 M 35 105 5 0 2 I 0 242 3 0 2 M 24 72 S 0 1 5 0 2 I 0 743 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 3047 3 0 2 S 1 2 M 47 141 5 0 2 I 0 3921 3 0 2 M 38 114 S 0 2 5 0 2 I 0 784 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1248 3 0 2 M 31 93 5 0 2 I 0 7812 3 0 2 M 25 75 S 0 2 5 0 2 I 0 538 3 0 2 S 1 1 M 52 156 5 0 2 I 0 5971 3 0 2 M 36 108 5 0 2 I 0 4462 3 0 2 M 32 96 5 0 2 I 0 2622 3 0 2 M 45 135 5 0 2 I 0 516 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	gene	148917	185310	2720	+	.	gene_id 1 ; sequence SPP00000036_1.0 ; gene_orientation +
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	148917	148980	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	148917	148980	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	148981	148982	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	148981	150003	.	+	.	intron_id 1
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	150002	150003	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	150004	150113	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	150004	150113	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	150114	150115	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	150114	151841	.	+	.	intron_id 2
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	151840	151841	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	151842	151946	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	151842	151946	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	151947	151948	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	151947	152192	.	+	.	intron_id 3
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	152191	152192	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	152193	152265	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	152193	152265	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	152266	152267	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	152266	153012	.	+	.	intron_id 4
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	153011	153012	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	153013	153132	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	153013	153132	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	153133	153134	.	+	.	intron_id 5 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	153133	156183	.	+	.	intron_id 5
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	156182	156183	.	+	.	intron_id 4 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	156184	156326	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	156184	156326	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	156327	156328	.	+	.	intron_id 6 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	156327	160251	.	+	.	intron_id 6
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	160250	160251	.	+	.	intron_id 5 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	160252	160367	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	160252	160367	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	160368	160369	.	+	.	intron_id 7 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	160368	161155	.	+	.	intron_id 7
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	161154	161155	.	+	.	intron_id 6 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	161156	161381	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	161156	161381	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	161382	161383	.	+	.	intron_id 8 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	161382	162633	.	+	.	intron_id 8
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	162632	162633	.	+	.	intron_id 7 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	162634	162726	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	162634	162726	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	162727	162728	.	+	.	intron_id 9 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	162727	170542	.	+	.	intron_id 9
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	170541	170542	.	+	.	intron_id 8 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	170543	170619	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	170543	170619	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	170620	170621	.	+	.	intron_id 10 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	170620	171161	.	+	.	intron_id 10
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	171160	171161	.	+	.	intron_id 9 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	171162	171318	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	171162	171318	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	171319	171320	.	+	.	intron_id 11 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	171319	177293	.	+	.	intron_id 11
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	177292	177293	.	+	.	intron_id 10 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	177294	177401	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	177294	177401	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	177402	177403	.	+	.	intron_id 12 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	177402	181867	.	+	.	intron_id 12
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	181866	181867	.	+	.	intron_id 11 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	181868	181963	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	181868	181963	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	181964	181965	.	+	.	intron_id 13 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	181964	184589	.	+	.	intron_id 13
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	184588	184589	.	+	.	intron_id 12 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	184590	184724	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	184590	184724	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice5	184725	184726	.	+	.	intron_id 14 ; splice_site "GT"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	intron	184725	185244	.	+	.	intron_id 14
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	splice3	185243	185244	.	+	.	intron_id 13 ; splice_site "AG"
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	cds	185245	185310	.	+	.	
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	exon	185245	185310	.	+	.	insertions 0 ; deletions 0
gi|357434057|gb|JH378306.1|:subseq(903858,334727)	exonerate:protein2genome:local	similarity	148917	185310	2720	+	.	alignment_id 1 ; Query SPP00000036_1.0 ; Align 148917 192 63 ; Align 150006 214 108 ; Align 151842 250 105 ; Align 152193 285 72 ; Align 153015 310 117 ; Align 156186 350 141 ; Align 160252 397 114 ; Align 161157 436 225 ; Align 162634 511 93 ; Align 170543 542 75 ; Align 171163 568 156 ; Align 177294 620 108 ; Align 181868 656 96 ; Align 184590 688 135 ; Align 185245 733 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis