Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000035_1.0.fa -t ./exonerate/SPP00000035_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo sapiens # Complete
        Target: gi|357434094|gb|JH378269.1|:subseq(2055122,339400) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00165, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2342
   Query range: 33 -> 524
  Target range: 200867 -> 149999

     34 : AlaAlaGlyGlnArgAspTyrAspLeuLeuValValGlyGlyGlySerGlyGlyLeuA :     53
          .!!||||||||||||||||||||||||||||||:!!||||||||||||||||||||||
          ThrAlaGlyGlnArgAspTyrAspLeuLeuValIleGlyGlyGlySerGlyGlyLeuA
 200867 : ACAGCAGGTCAGCGGGACTATGATCTCCTGGTGATTGGCGGGGGATCTGGCGGCCTGG : 200810

     54 : laCysAlaLysGlu{A}  >>>> Target Intron 1 >>>>  {la}AlaGlnLe :     61
          ||||||||||||||{|}           10552 bp          {||}||||||||
          laCysAlaLysGlu{A}++                         ++{la}AlaGlnLe
 200809 : CTTGTGCCAAGGAA{G}gt.........................ag{CT}GCCCAGCT : 190234

     62 : uGlyArgLysValAlaValValAspTyrValGluProSerProGln{G}  >>>> Ta :     77
          |||||||||||||||||||||||||||||||||||||||||||!:!{|}         
          uGlyArgLysValAlaValValAspTyrValGluProSerProArg{G}++       
 190233 : GGGAAGGAAGGTGGCCGTGGTGGACTACGTGGAACCTTCTCCCCGA{G}gt....... : 190183

     78 : rget Intron 2 >>>>  {ly}ThrArgTrpGlyLeuGlyGlyThrCysValAsnV :     89
             786 bp           {||}||||||||||||||||||||||||||||||||||
                            ++{ly}ThrArgTrpGlyLeuGlyGlyThrCysValAsnV
 190182 : ..................ag{GC}ACCCGGTGGGGCCTCGGGGGCACCTGCGTCAACG : 189364

     90 : alGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyLeuIleGl :    108
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||!:
          alGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyLeuIleAr
 189363 : TCGGCTGCATTCCCAAGAAGCTGATGCACCAGGCGGCACTGCTGGGGGGCCTGATCCG : 189307

    109 : nAspAlaProAsnTyrGlyTrpGluValAlaGlnProValProHisAsp{Tr}  >>> :    125
          !|||||||||:!!||||||||||||||||||||||||||||||||||||{||}     
          gAspAlaProHisTyrGlyTrpGluValAlaGlnProValProHisAsp{Tr}++   
 189306 : AGACGCCCCCCATTATGGCTGGGAGGTGGCCCAGCCCGTGCCGCATGAC{TG}gt... : 189252

    126 : > Target Intron 3 >>>>  {p}ArgLysMetAlaGluAlaValGlnAsnHisV :    136
                 802 bp           {|}|||||||||||||||||||||||||||||||
                                ++{p}ArgLysMetAlaGluAlaValGlnAsnHisV
 189251 : ......................ag{G}AGGAAGATGGCAGAAGCTGTTCAAAATCACG : 188421

    137 : alLysSerLeuAsnTrpGlyHisArgValGlnLeuGlnAsp{Ar}  >>>> Target :    150
          |||||||||||||||||||||||||||||||||||!!.|||{||}           22
          alLysSerLeuAsnTrpGlyHisArgValGlnLeuHisAsp{Ar}++           
 188420 : TGAAATCCTTGAACTGGGGCCACCGTGTCCAGCTGCACGAC{AG}gt........... : 188375

    151 :  Intron 4 >>>>  {g}LysValLysTyrPheAsnIleLysAlaSerPheValAsp :    163
          10 bp           {|}||||||||||||||||||:!!||||||.!!|||||||||
                        ++{g}LysValLysTyrPheAsnValLysAlaGlyPheValAsp
 188374 : ..............ag{G}AAAGTCAAGTACTTTAACGTCAAAGCTGGCTTTGTTGAC : 186130

    164 : GluHisThrValCysGlyValAlaLysGlyGlyLysGlu  >>>> Target Intro :    177
          |||||||||||| !!||||||||||||||||||||||||            493 bp 
          GluHisThrValArgGlyValAlaLysGlyGlyLysGlu++                 
 186129 : GAGCACACAGTTCGCGGTGTTGCCAAAGGTGGGAAAGAGgt................. : 186086

    178 : n 5 >>>>  IleLeuLeuSerAlaAspHisIleIleIleAlaThrGlyGlyArgPro :    192
                    ||||||||||||||||||||||||:!!|||||||||||||||||||||
                  ++IleLeuLeuSerAlaAspHisIleValIleAlaThrGlyGlyArgPro
 186085 : ........agATTCTGCTGTCAGCTGACCACATCGTCATCGCTACCGGAGGGCGGCCG : 185550

    193 : ArgTyrProThrHis  >>>> Target Intron 6 >>>>  IleGluGlyAlaLe :    202
          |||||||||.!!|||           4489 bp           :!!|||||||||||
          ArgTyrProAlaHis++                         ++ValGluGlyAlaLe
 185549 : AGGTACCCCGCACACgt.........................agGTCGAAGGTGCTTT : 181031

    203 : uGluTyrGlyIleThrSerAspAspIlePheTrpLeuLysGluSerProGlyLys{Th :    221
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||{||
          uGluTyrGlyIleThrSerAspAspIlePheTrpLeuLysGluSerProGlyLys{Th
 181030 : GGAATATGGAATCACAAGCGATGACATCTTCTGGCTGAAGGAGTCCCCTGGAAAA{AC : 180974

    222 : }  >>>> Target Intron 7 >>>>  {r}LeuValValGlyAlaSer{T}  >> :    228
          }           10285 bp          {|}||||||||||||||||||{|}    
          }++                         ++{r}LeuValValGlyAlaSer{T}++  
 180973 : }gt.........................ag{G}TTGGTGGTCGGGGCCAGC{T}gt.. : 170665

    229 : >> Target Intron 8 >>>>  {yr}ValAlaLeuGluCysAlaGlyPheLeuTh :    238
                 1019 bp           {||}|||||||||||||||||||||||||||||
                                 ++{yr}ValAlaLeuGluCysAlaGlyPheLeuTh
 170664 : .......................ag{AC}GTGGCCCTGGAGTGTGCTGGCTTCCTCAC : 169619

    239 : rGlyIleGlyLeuAspThrThrIleMetMetArgSerIleProLeuArgGlyPheAsp :    257
          ||||:!!|||||||||||||||:!!|||||||||||||||||||||||||||||||||
          rGlyLeuGlyLeuAspThrThrValMetMetArgSerIleProLeuArgGlyPheAsp
 169618 : CGGGCTCGGGCTGGACACCACAGTCATGATGCGAAGCATCCCCCTCCGCGGCTTCGAC : 169562

    258 : Gln  >>>> Target Intron 9 >>>>  GlnMetSerSerMetValIleGluHi :    267
          |||           2004 bp           ||||||||||||:!!|||!  |||||
          Gln++                         ++GlnMetSerSerLeuValThrGluHi
 169561 : CAGgt.........................agCAAATGTCCTCCTTGGTCACGGAGCA : 167528

    268 : sMetAlaSerHisGlyThrArgPheLeuArgGlyCysAlaProSerArgValArgArg :    286
          |||||||||||||||||||||||||||||||||||||.!!||||||!:!|||||||||
          sMetAlaSerHisGlyThrArgPheLeuArgGlyCysThrProSerGlnValArgArg
 167527 : CATGGCATCTCACGGCACCCGGTTCCTGAGGGGGTGCACCCCCTCCCAAGTCAGGAGG : 167471

    287 : LeuProAspGlyGlnLeuGlnValThrTrpGluAspSerThrThrGlyLysGluAspT :    306
          ||||||||||||||||||||||||||||||||||||!!!|||||||||||||||! !|
          LeuProAspGlyGlnLeuGlnValThrTrpGluAspCysThrThrGlyLysGluGlyT
 167470 : CTCCCGGACGGCCAGCTGCAGGTCACCTGGGAGGACTGCACCACTGGCAAGGAGGGCA : 167411

    307 : hrGlyThrPheAspThrValLeuTrpAlaIle{G}  >>>> Target Intron 10 :    317
          |||||||||||..!|||||||||||||||:!!{|}           11147 bp    
          hrGlyThrPheSerThrValLeuTrpAlaVal{G}++                     
 167410 : CGGGCACCTTCAGCACCGTCCTGTGGGCCGTA{G}gt..................... : 167375

    318 :  >>>>  {ly}ArgValProAspThrArgSerLeuAsnLeuGluLysAlaGlyValAs :    333
                 {||}|||||||||||||||||||||||||||||||||||||||||||||||
               ++{ly}ArgValProAspThrArgSerLeuAsnLeuGluLysAlaGlyValAs
 167374 : .....ag{GT}CGAGTTCCAGACACCAGAAGTCTGAATTTGGAGAAGGCTGGGGTAGA : 156183

    334 : pThrSerProAspThrGlnLysIleLeuValAspSerArgGluAlaThrSerValPro :    352
          ||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||
          pThrSerProAsnThrGlnLysIleLeuValAspSerArgGluAlaThrSerValPro
 156182 : CACTAGTCCCAACACTCAGAAGATCCTGGTGGACTCCCGGGAAGCCACCTCTGTGCCC : 156126

    353 : HisIleTyrAlaIleGlyAspValValGlu  >>>> Target Intron 11 >>>> :    363
          ||||||||||||||||||||||||||||||            2584 bp         
          HisIleTyrAlaIleGlyAspValValGlu++                          
 156125 : CATATCTATGCCATTGGCGACGTGGTGGAGgt.......................... : 156091

    364 :   GlyArgProGluLeuThrProIleAlaIleMetAlaGlyArgLeuLeuValGlnAr :    381
            |||||||||||||||||||||!  |||:!!||||||||||||||||||!.!|||||
          ++GlyArgProGluLeuThrProThrAlaValMetAlaGlyArgLeuLeuAlaGlnAr
 156090 : agGGGCGGCCTGAGCTGACGCCCACGGCTGTCATGGCTGGGAGGCTCCTGGCACAGCG : 153455

    382 : gLeuPheGlyGlySerSerAspLeuMetAspTyrAspAsn  >>>> Target Intr :    395
          |||||||||||||||||||! !|||||||||||||||!!.            346 bp
          gLeuPheGlyGlySerSerAlaLeuMetAspTyrAspLys++                
 153454 : GCTCTTTGGTGGGTCCTCAGCCCTGATGGACTACGACAAGgt................ : 153411

    396 : on 12 >>>>  ValProThrThrValPheThrProLeuGluTyrGlyCysValGlyL :    410
                      ||||||||||||||||||||||||||||||||||||||||||||||
                    ++ValProThrThrValPheThrProLeuGluTyrGlyCysValGlyL
 153410 : ..........agGTTCCCACGACCGTCTTCACCCCACTGGAGTACGGCTGCGTGGGGC : 153022

    411 : euSerGluGluGluAlaValAlaArgHisGlyGlnGluHisValGlu  >>>> Targ :    426
          ||||||||||||||||||||||||||||||||||||||!.!||||||           
          euSerGluGluGluAlaValAlaArgHisGlyGlnGluArgValGlu++         
 153021 : TGTCTGAGGAAGAGGCAGTGGCTCGCCATGGGCAGGAGCGTGTTGAGgt......... : 152972

    427 : et Intron 13 >>>>  ValTyrHisAlaHisTyrLysProLeuGluPheThrVal :    438
           1695 bp           |||||||||||||||||||||||||||||||||||||||
                           ++ValTyrHisAlaHisTyrLysProLeuGluPheThrVal
 152971 : .................agGTCTATCACGCGCATTATAAACCACTGGAGTTCACAGTG : 151243

    439 : AlaGlyArgAspAlaSerGlnCysTyrValLys  >>>> Target Intron 14 > :    450
           !!||||||||||||||||||||||||||||||            156 bp       
          ProGlyArgAspAlaSerGlnCysTyrValLys++                       
 151242 : CCTGGGCGGGATGCGTCCCAGTGTTACGTAAAGgt....................... : 151205

    451 : >>>  MetValCysLeuArgGluProProGlnLeuValLeuGlyLeuHisPheLeuGl :    467
               |||||||||||||||||||||||||||||||||||||||||||||||||||||
             ++MetValCysLeuArgGluProProGlnLeuValLeuGlyLeuHisPheLeuGl
 151204 : ...agATGGTGTGCCTGAGGGAGCCCCCGCAGCTAGTGCTGGGCCTGCACTTCCTCGG : 151000

    468 : yProAsnAlaGlyGluValThrGlnGlyPheAlaLeuGlyIle{Ly}  >>>> Targ :    482
          ||||||||||||||||||||||||||||||||||:!!||||||{||}           
          yProAsnAlaGlyGluValThrGlnGlyPheAlaValGlyIle{Ly}++         
 150999 : CCCCAACGCAGGCGAAGTTACTCAGGGATTTGCTGTGGGAATC{AA}gt......... : 150951

    483 : et Intron 15 >>>>  {s}CysGlyAlaSerTyrAlaGlnValMetArgThrVal :    494
           827 bp            {|}||||||!.!||||||!.!|||||||||!:!||||||
                           ++{s}CysGlyValSerTyrValGlnValMetGlnThrVal
 150950 : .................ag{G}TGTGGGGTCTCCTATGTACAGGTGATGCAGACCGTG : 150092

    495 : GlyIleHisProThrCysSerGluGluValValLysLeuArgIleSerLysArgSerG :    514
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyIleHisProThrCysSerGluGluValValLysLeuArgIleSerLysArgSerG
 150091 : GGCATCCATCCCACGTGCTCCGAGGAGGTGGTCAAGCTGCGCATCTCCAAGCGCTCAG : 150032

    515 : lyLeuAspProThrValThrGlyCysUnkGly :    524
          ||||||||||||||||||||||||||   |||
          lyLeuAspProThrValThrGlyCys***Gly
 150031 : GCCTGGACCCCACGGTGACAGGCTGCTGAGGG : 150000

vulgar: SPP00000035_1.0 33 524 . gi|357434094|gb|JH378269.1|:subseq(2055122,339400) 200867 149999 - 2342 M 24 72 S 0 1 5 0 2 I 0 10548 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 782 3 0 2 S 1 2 M 47 141 S 0 2 5 0 2 I 0 798 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 2206 3 0 2 S 1 1 M 26 78 5 0 2 I 0 489 3 0 2 M 21 63 5 0 2 I 0 4485 3 0 2 M 23 69 S 0 2 5 0 2 I 0 10281 3 0 2 S 1 1 M 6 18 S 0 1 5 0 2 I 0 1015 3 0 2 S 1 2 M 30 90 5 0 2 I 0 2000 3 0 2 M 58 174 S 0 1 5 0 2 I 0 11143 3 0 2 S 1 2 M 45 135 5 0 2 I 0 2580 3 0 2 M 32 96 5 0 2 I 0 342 3 0 2 M 31 93 5 0 2 I 0 1691 3 0 2 M 24 72 5 0 2 I 0 152 3 0 2 M 32 96 S 0 2 5 0 2 I 0 823 3 0 2 S 1 1 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	gene	150000	200867	2342	-	.	gene_id 1 ; sequence SPP00000035_1.0 ; gene_orientation +
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	200795	200867	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	200795	200867	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	200793	200794	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	190243	200794	.	-	.	intron_id 1
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	190243	190244	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	190186	190242	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	190186	190242	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	190184	190185	.	-	.	intron_id 2 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	189400	190185	.	-	.	intron_id 2
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	189400	189401	.	-	.	intron_id 1 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	189255	189399	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	189255	189399	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	189253	189254	.	-	.	intron_id 3 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	188453	189254	.	-	.	intron_id 3
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	188453	188454	.	-	.	intron_id 2 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	188378	188452	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	188378	188452	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	188376	188377	.	-	.	intron_id 4 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	186168	188377	.	-	.	intron_id 4
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	186168	186169	.	-	.	intron_id 3 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	186089	186167	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	186089	186167	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	186087	186088	.	-	.	intron_id 5 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	185596	186088	.	-	.	intron_id 5
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	185596	185597	.	-	.	intron_id 4 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	185533	185595	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	185533	185595	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	185531	185532	.	-	.	intron_id 6 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	181044	185532	.	-	.	intron_id 6
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	181044	181045	.	-	.	intron_id 5 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	180973	181043	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	180973	181043	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	180971	180972	.	-	.	intron_id 7 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	170688	180972	.	-	.	intron_id 7
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	170688	170689	.	-	.	intron_id 6 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	170668	170687	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	170668	170687	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	170666	170667	.	-	.	intron_id 8 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	169649	170667	.	-	.	intron_id 8
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	169649	169650	.	-	.	intron_id 7 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	169557	169648	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	169557	169648	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	169555	169556	.	-	.	intron_id 9 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	167553	169556	.	-	.	intron_id 9
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	167553	167554	.	-	.	intron_id 8 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	167378	167552	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	167378	167552	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	167376	167377	.	-	.	intron_id 10 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	156231	167377	.	-	.	intron_id 10
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	156231	156232	.	-	.	intron_id 9 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	156094	156230	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	156094	156230	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	156092	156093	.	-	.	intron_id 11 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	153510	156093	.	-	.	intron_id 11
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	153510	153511	.	-	.	intron_id 10 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	153414	153509	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	153414	153509	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	153412	153413	.	-	.	intron_id 12 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	153068	153413	.	-	.	intron_id 12
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	153068	153069	.	-	.	intron_id 11 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	152975	153067	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	152975	153067	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	152973	152974	.	-	.	intron_id 13 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	151280	152974	.	-	.	intron_id 13
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	151280	151281	.	-	.	intron_id 12 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	151208	151279	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	151208	151279	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	151206	151207	.	-	.	intron_id 14 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	151052	151207	.	-	.	intron_id 14
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	151052	151053	.	-	.	intron_id 13 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	150954	151051	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	150954	151051	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice5	150952	150953	.	-	.	intron_id 15 ; splice_site "GT"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	intron	150127	150953	.	-	.	intron_id 15
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	splice3	150127	150128	.	-	.	intron_id 14 ; splice_site "AG"
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	cds	150000	150126	.	-	.	
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	exon	150000	150126	.	-	.	insertions 0 ; deletions 0
gi|357434094|gb|JH378269.1|:subseq(2055122,339400)	exonerate:protein2genome:local	similarity	150000	200867	2342	-	.	alignment_id 1 ; Query SPP00000035_1.0 ; Align 200868 34 72 ; Align 190241 59 54 ; Align 189398 78 141 ; Align 188452 126 72 ; Align 186167 151 78 ; Align 185596 177 63 ; Align 181044 198 69 ; Align 170687 222 18 ; Align 169647 229 90 ; Align 167553 259 174 ; Align 156229 318 135 ; Align 153510 363 96 ; Align 153068 395 93 ; Align 151280 426 72 ; Align 151052 450 96 ; Align 150126 483 126
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis