Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000034_1.0.fa -t ./exonerate/SPP00000034_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete
        Target: gi|357434224|gb|JH378139.1|:subseq(10382837,319261) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2494
   Query range: 0 -> 499
  Target range: 145128 -> 178664

      1 : MetAsnGlyProGluAspLeuProLysSerTyrAspTyrAspLeuIleIleIleGlyG :     20
          ||||||||||||||||||||||||:!!|||||||||||||||||||||||||||||||
          MetAsnGlyProGluAspLeuProGluSerTyrAspTyrAspLeuIleIleIleGlyG
 145129 : ATGAATGGCCCTGAGGATCTTCCTGAGTCCTATGACTATGACCTTATCATCATTGGAG : 145186

     21 : lyGlySerGlyGlyLeuAlaAlaAlaLys  >>>> Target Intron 1 >>>>   :     30
          |||||||||||||||||||||||||||||           2423 bp           
          lyGlySerGlyGlyLeuAlaAlaAlaLys+-                         ++
 145187 : GTGGCTCCGGAGGCCTGGCAGCTGCTAAGgc.........................ag : 147637

     31 : GluAlaAlaGlnTyrGlyLysLysValMetValLeuAspPheValThrProThrProL :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluAlaAlaGlnTyrGlyLysLysValMetValLeuAspPheValThrProThrProL
 147638 : GAAGCAGCCCAATATGGCAAGAAGGTGATGGTCCTGGACTTTGTCACTCCCACCCCTC : 147696

     50 : euGlyThrArgTrp{G}  >>>> Target Intron 2 >>>>  {ly}LeuGlyGl :     57
          ||||||||||||||{|}           2289 bp           {||}||||||||
          euGlyThrArgTrp{G}++                         ++{ly}LeuGlyGl
 147697 : TTGGAACTAGATGG{G}gt.........................ag{GT}CTCGGAGG : 150009

     58 : yThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeu :     76
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeu
 150010 : AACATGTGTGAATGTGGGTTGCATACCTAAAAAACTGATGCACCAAGCCGCTTTATTA : 150066

     77 : GlyGlnAlaLeuGlnAspSerArgAsnTyrGlyTrpLysValGluGluThr{V}  >> :     94
          |||||||||||||||||||||||||||||||||||||||||||||||||||{|}    
          GlyGlnAlaLeuGlnAspSerArgAsnTyrGlyTrpLysValGluGluThr{V}++  
 150067 : GGACAAGCCCTACAAGACTCTCGAAACTATGGATGGAAAGTCGAGGAGACA{G}gt.. : 150123

     95 : >> Target Intron 3 >>>>  {al}LysHisAspTrpAspArgMetIleGluAl :    104
                 2981 bp           {||}|||||||||||||||||||||||||||||
                                 ++{al}LysHisAspTrpAspArgMetIleGluAl
 150124 : .......................ag{TT}AAGCATGATTGGGACAGAATGATAGAAGC : 153131

    105 : aValGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLys :    123
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          aValGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLys
 153132 : TGTACAGAATCACATTGGCTCTTTGAATTGGGGCTACCGAGTAGCTCTGCGGGAGAAG : 153188

    124 : LysValValTyrGluAsnAlaTyrGlyGlnPheIleGlyProHisArgIleLys  >> :    142
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
          LysValValTyrGluAsnAlaTyrGlyGlnPheIleGlyProHisArgIleLys++  
 153189 : AAAGTCGTCTATGAGAATGCTTACGGGCAATTTATTGGTCCTCACAGGATTAAGgt.. : 153247

    143 : >> Target Intron 4 >>>>  AlaThrAsnAsnLysGlyLysGluLysIleTyr :    152
                  399 bp           |||||||||||||||||||||||||||||||||
                                 ++AlaThrAsnAsnLysGlyLysGluLysIleTyr
 153248 : .......................agGCAACAAATAATAAAGGCAAAGAAAAGATTTAT : 153674

    153 : SerAlaGluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProG :    172
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerAlaGluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProG
 153675 : TCAGCAGAGAGATTTCTCATTGCCACTGGTGAAAGACCACGTTACTTGGGCATCCCTG : 153734

    173 : lyAspLysGluTyrCysIleSer{Se}  >>>> Target Intron 5 >>>>  {r :    180
          |||||||||||||||||||||||{||}           2456 bp           {|
          lyAspLysGluTyrCysIleSer{Se}++                         ++{r
 153735 : GTGACAAAGAATACTGCATCAGC{AG}gt.........................ag{T : 156216

    181 : }AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSer :    199
          }||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||
          }AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuIleValGlyAlaSer
 156217 : }GATGATCTTTTCTCCTTACCTTACTGCCCGGGGAAGACCCTCATCGTTGGAGCATCC : 156271

    200 : TyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValM :    219
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValM
 156272 : TATGTTGCTTTGGAATGTGCTGGATTTCTTGCTGGTATCGGTTTAGATGTCACTGTTA : 156331

    220 : etValArgSerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGl :    238
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          etValArgSerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGl
 156332 : TGGTTAGGTCCATTCTTCTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGTGA : 156388

    239 : uHisMetGluGluHisGlyIleLysPheIleArgGlnPheValProIleLys  >>>> :    256
          ||||||||||||||||||||||||||||||||||||||||||||||||||||      
          uHisMetGluGluHisGlyIleLysPheIleArgGlnPheValProIleLys++    
 156389 : ACACATGGAGGAACATGGCATCAAGTTTATAAGACAGTTTGTGCCAATTAAAgt.... : 156444

    257 :  Target Intron 6 >>>>  ValGluGlnIleGluAlaGlyThrProGlyArgLe :    267
               3064 bp           |||||||||||||||||||||||||||||||||||
                               ++ValGluGlnIleGluAlaGlyThrProGlyArgLe
 156445 : .....................agGTTGAACAAATTGAAGCAGGGACACCAGGCCGACT : 159539

    268 : uArgValValAlaGlnSerThrAsnSerGluGluIleIleGluGlyGluTyrAsnThr :    286
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uArgValValAlaGlnSerThrAsnSerGluGluIleIleGluGlyGluTyrAsnThr
 159540 : CCGTGTAGTAGCTCAGTCGACCAATAGTGAGGAAATCATTGAAGGAGAGTATAATACG : 159596

    287 :   >>>> Target Intron 7 >>>>  ValMetLeuAlaIleGlyArgAspAlaCy :    296
                     1511 bp           |||:!!|||||||||||||||||||||||
          ++                         ++ValLeuLeuAlaIleGlyArgAspAlaCy
 159597 : gt.........................agGTGTTGTTGGCAATAGGAAGAGATGCTTG : 161137

    297 : sThrArgLysIleGlyLeuGluThrValGlyValLysIleAsnGlu{Ly}  >>>> T :    312
          ||||||||||||||||||||||||||||||||||||||||||||||{||}        
          sThrArgLysIleGlyLeuGluThrValGlyValLysIleAsnGlu{Ly}++      
 161138 : CACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAAGATAAATGAA{AA}gt...... : 161189

    313 : arget Intron 8 >>>>  {s}ThrGlyLysIleProValThrAspGluGluGlnT :    324
              683 bp           {|}||||||||||||||||||||||||||||||||||
                             ++{s}ThrGlyLysIleProValThrAspGluGluGlnT
 161190 : ...................ag{G}ACTGGAAAAATACCTGTCACAGATGAAGAGCAGA : 161904

    325 : hrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluAspLysValGluLeuTh :    343
          |||||||||||||||||||||||||||||||||||||||||! !||||||||||||||
          hrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluGlyLysValGluLeuTh
 161905 : CCAATGTGCCTTACATCTATGCCATTGGTGATATATTGGAGGGTAAGGTGGAGCTTAC : 161961

    344 : rProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThr :    362
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThr
 161962 : CCCAGTTGCAATCCAGGCAGGACGATTGCTGGCTCAGAGGCTCTATGCAGGTTCCACT : 162018

    363 : ValLys  >>>> Target Intron 9 >>>>  CysAspTyrGluAsnValProTh :    372
          ||||||            526 bp           |||||||||||||||||||||||
          ValLys++                         ++CysAspTyrGluAsnValProTh
 162019 : GTTAAGgt.........................agTGTGACTATGAAAATGTTCCGAC : 162574

    373 : rThrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaVal :    391
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rThrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaVal
 162575 : CACTGTATTTACTCCTTTGGAATATGGAGCCTGTGGCCTTTCTGAGGAGAAAGCTGTG : 162631

    392 : GluLysPheGlyGluGluAsnIleGlu  >>>> Target Intron 10 >>>>  V :    401
          |||||||||||||||||||||||||||            2124 bp           |
          GluLysPheGlyGluGluAsnIleGlu++                          ++V
 162632 : GAGAAGTTTGGGGAGGAGAATATTGAGgt..........................agG : 164785

    402 : alTyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAsnAsnLy :    420
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alTyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAsnAsnLy
 164786 : TTTACCATAGTTACTTTTGGCCATTGGAATGGACGATTCCATCAAGAGATAACAACAA : 164842

    421 : sCysTyrAlaLysIleIleCysAsnThrLysAspAsn  >>>> Target Intron  :    433
          |||||||||||||||||||||||||||||||||||||            4243 bp  
          sCysTyrAlaLysIleIleCysAsnThrLysAspAsn++                   
 164843 : ATGTTATGCAAAAATAATCTGTAATACTAAAGACAATgt................... : 164883

    434 : 11 >>>>  GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValT :    449
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValT
 164884 : .......agGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTA : 169172

    450 : hrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerTh :    468
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerTh
 169173 : CACAAGGCTTCGCAGCTGCACTGAAATGTGGACTGACCAAAAAACAGCTGGACAGCAC : 169229

    469 : rIleGlyIleHisProValCysAlaGlu  >>>> Target Intron 12 >>>>   :    478
          ||||||||||||||||||||||||||||            9340 bp           
          rIleGlyIleHisProValCysAlaGlu++                          ++
 169230 : AATTGGAATCCACCCTGTCTGTGCAGAGgt..........................ag : 178597

    479 : ValPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyC :    497
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyC
 178598 : GTATTCACAACACTCTCTGTGACCAAACGCTCTGGGGCAAGCATCCTGCAGGCTGGCT : 178656

    498 : ysUnkGly :    499
          ||   |||
          ys***Gly
 178657 : GCTGAGGT : 178664

vulgar: SPP00000034_1.0 0 499 . gi|357434224|gb|JH378139.1|:subseq(10382837,319261) 145128 178664 + 2494 M 29 87 5 0 2 I 0 2419 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2285 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 2977 3 0 2 S 1 2 M 47 141 5 0 2 I 0 395 3 0 2 M 38 114 S 0 2 5 0 2 I 0 2452 3 0 2 S 1 1 M 75 225 5 0 2 I 0 3060 3 0 2 M 31 93 5 0 2 I 0 1507 3 0 2 M 25 75 S 0 2 5 0 2 I 0 679 3 0 2 S 1 1 M 52 156 5 0 2 I 0 522 3 0 2 M 36 108 5 0 2 I 0 2120 3 0 2 M 32 96 5 0 2 I 0 4239 3 0 2 M 45 135 5 0 2 I 0 9336 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	gene	145129	178664	2494	+	.	gene_id 1 ; sequence SPP00000034_1.0 ; gene_orientation +
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	145129	145215	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	145129	145215	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	145216	145217	.	+	.	intron_id 1 ; splice_site "GC"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	145216	147638	.	+	.	intron_id 1
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	147637	147638	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	147639	147711	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	147639	147711	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	147712	147713	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	147712	150000	.	+	.	intron_id 2
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	149999	150000	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	150001	150120	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	150001	150120	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	150121	150122	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	150121	153101	.	+	.	intron_id 3
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	153100	153101	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	153102	153244	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	153102	153244	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	153245	153246	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	153245	153643	.	+	.	intron_id 4
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	153642	153643	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	153644	153759	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	153644	153759	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	153760	153761	.	+	.	intron_id 5 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	153760	156215	.	+	.	intron_id 5
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	156214	156215	.	+	.	intron_id 4 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	156216	156441	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	156216	156441	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	156442	156443	.	+	.	intron_id 6 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	156442	159505	.	+	.	intron_id 6
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	159504	159505	.	+	.	intron_id 5 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	159506	159598	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	159506	159598	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	159599	159600	.	+	.	intron_id 7 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	159599	161109	.	+	.	intron_id 7
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	161108	161109	.	+	.	intron_id 6 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	161110	161186	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	161110	161186	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	161187	161188	.	+	.	intron_id 8 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	161187	161869	.	+	.	intron_id 8
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	161868	161869	.	+	.	intron_id 7 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	161870	162026	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	161870	162026	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	162027	162028	.	+	.	intron_id 9 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	162027	162552	.	+	.	intron_id 9
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	162551	162552	.	+	.	intron_id 8 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	162553	162660	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	162553	162660	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	162661	162662	.	+	.	intron_id 10 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	162661	164784	.	+	.	intron_id 10
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	164783	164784	.	+	.	intron_id 9 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	164785	164880	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	164785	164880	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	164881	164882	.	+	.	intron_id 11 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	164881	169123	.	+	.	intron_id 11
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	169122	169123	.	+	.	intron_id 10 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	169124	169258	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	169124	169258	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice5	169259	169260	.	+	.	intron_id 12 ; splice_site "GT"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	intron	169259	178598	.	+	.	intron_id 12
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	splice3	178597	178598	.	+	.	intron_id 11 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	cds	178599	178664	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	exon	178599	178664	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(10382837,319261)	exonerate:protein2genome:local	similarity	145129	178664	2494	+	.	alignment_id 1 ; Query SPP00000034_1.0 ; Align 145129 1 87 ; Align 147639 30 72 ; Align 150003 55 117 ; Align 153104 95 141 ; Align 153644 142 114 ; Align 156217 181 225 ; Align 159506 256 93 ; Align 161110 287 75 ; Align 161871 313 156 ; Align 162553 365 108 ; Align 164785 401 96 ; Align 169124 433 135 ; Align 178599 478 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis