Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000033_1.0.fa -t ./exonerate/SPP00000033_1.0_6_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: gi|357434208|gb|JH378155.1|:subseq(1196959,301160) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00051, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 738
   Query range: 250 -> 435
  Target range: 150554 -> 149999

    251 : ThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProG :    270
          .!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProG
 150554 : GCTAAACCCTTAGGAACCCAAGTTGCTGTCAATGCACACCAATGGCTGGATAATCCTG : 150497

    271 : luArgTrpAsnLysValLysMetValValSerArgGluGluValGluLeuAlaTyrGl :    289
          ||||| !!!!.:!!||||||:!!||||||||| !!||| !!|||||||||||||||||
          luArgGlyLysGluValLysLeuValValSerGlyGlu***ValGluLeuAlaTyrGl
 150496 : AAAGAGGGAAGGAGGTGAAGTTGGTGGTCTCTGGAGAATAGGTAGAGCTGGCCTATCA : 150440

    290 : nGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisThr :    308
          ||||||||||!!.|||||||||||||||! !!:!||||||||||||||||||||||||
          nGluAlaMetLeuAsnMetAlaThrLeuIleGlnThrAlaAlaGlyLeuMetHisThr
 150439 : GGAAGCCATGTTAAATATGGCCACCCTCATCCAAACTGCTGCTGGATTAATGCACACA : 150383

    309 : PheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGlnA :    328
           !!||||||||||||||||||! !||||||||||||||||||! !|||||||||||||
          ValAsnAlaHisAlaAlaThrGlyIleThrGlyPheGlyIleProGlyHisSerGlnA
 150382 : GTCAATGCCCATGCGGCCACAGGTATCACAGGCTTTGGTATTCCAGGACACTCTCAGA : 150323

    329 : snLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIleIl :    347
          |||||||||||||||||||||||!!:||||||||||||! !||||||||||||:!!||
          snLeuAlaLysGlnGlnArgAsnAspValSerPheValThrHisAsnLeuProValIl
 150322 : ATCTTGCAAAACAGCAAAGAAATGATGTGTCCTTTGTCACTCATAATCTGCCAGTCAT : 150266

    348 : eAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyThr :    366
          ||||||||||||||||:!!||||||.!!||||||!:!||| !!|||||||||||||||
          eAlaLysMetAlaAlaIleSerLysThrSerGlyGlnPhe***LeuLeuGlnGlyThr
 150265 : TGCCAAGATGGCTGCCATCAGCAAGACCAGTGGGCAGTTTTGACTTCTTCAGGGAACC : 150209

    367 : SerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgP :    386
          ||||||||||||||| !!|||||||||||||||||||||!:!||| !!!.!! !!.!|
          SerAlaGluThrSerArgGlyLeuLeuIleCysLeuProLysGlu***ValAspHisP
 150208 : TCAGCTGAAACCTCAAGAGGATTATTGATTTGTCTTCCAAAAGAATAGGTGGATCACT : 150149

    387 : heCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleValGl :    405
          ||||||||||||||!:!|||||||||||| !!||||||||||||!.!||||||!.!||
          heCysSerGluIleArgSerSerLysTyrArgGluGlyHisGlnGlyTrpIleAlaGl
 150148 : TTTGTTCTGAAATCAGATCTTCCAAGTATAGAGAGGGTCACCAAGGGTGGATCGCTGG : 150092

    406 : yIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleGlu :    424
          |||||||||||||||||||!:!|||||| !!:!!|||||||||||| !!|||||||||
          yIleValGluLysGlyAsnGlnThrAlaTrpValIleAspLysProGlyValIleGlu
 150091 : CATTGTGGAAAAGGGAAACCAGACAGCCTGGGTCATTGACAAGCCTGGAGTTATTGAG : 150035

    425 : ValLeuProArgGlyAlaThrAlaAlaValLeu :    435
          |||||||||!.!! !||||||||||||!.!|||
          ValLeuProHisValAlaThrAlaAlaAlaLeu
 150034 : GTCCTACCTCATGTGGCCACTGCCGCTGCTCTT : 150000

vulgar: SPP00000033_1.0 250 435 . gi|357434208|gb|JH378155.1|:subseq(1196959,301160) 150554 149999 - 738 M 185 555
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	gene	150000	150554	738	-	.	gene_id 1 ; sequence SPP00000033_1.0 ; gene_orientation .
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	cds	150000	150554	.	-	.	
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	exon	150000	150554	.	-	.	insertions 0 ; deletions 0
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	similarity	150000	150554	738	-	.	alignment_id 1 ; Query SPP00000033_1.0 ; Align 150555 251 555
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: gi|357434208|gb|JH378155.1|:subseq(1196959,301160) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00051, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 224
   Query range: 104 -> 169
  Target range: 150959 -> 150764

    105 : GlyAlaGlyProSerProThrPheProAlaLeuGlyIleGlyMetAspSerCysValI :    124
          |||!.!||||||!!!|||!:!  ! !!|||! !|||||||||||||||||||||||||
          GlyGlyGlyProTrpProSerProSerAlaGlnGlyIleGlyMetAspSerCysValI
 150959 : GGGGGTGGGCCCTGGCCCAGCCCTTCCGCTCAGGGCATTGGGATGGACTCTTGCGTCA : 150902

    125 : leProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyrProLe :    143
          ||||||||||||||! !! !||||||! !|||||||||||||||||||||||| !!||
          leProLeuArgHisGluAspLeuSerGlnValGlnThrThrAspPhePheTyrSerLe
 150901 : TTCCCCTGAGACATGAGGACCTGTCACAGGTGCAGACCACAGACTTCTTCTACTCCTT : 150845

    144 : uValGluAspProTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeu :    162
          |:!!|||||| !!|||||||||||| !!! !|||||||||!!.||||||!!!||||||
          uMetGluAspSerTyrMetMetGlyCysThrAlaCysAlaLysValLeuArgAspLeu
 150844 : GATGGAGGATTCCTACATGATGGGGTGCACAGCTTGTGCCAAAGTGCTAAGGGACCTC : 150788

    163 : TyrAlaMetGlyIleThrGlu :    169
          !::||||||! !|||.!!|||
          TrpAlaMetValIleAlaGlu
 150787 : TGGGCCATGGTCATTGCTGAG : 150765

vulgar: SPP00000033_1.0 104 169 . gi|357434208|gb|JH378155.1|:subseq(1196959,301160) 150959 150764 - 224 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	gene	150765	150959	224	-	.	gene_id 2 ; sequence SPP00000033_1.0 ; gene_orientation .
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	cds	150765	150959	.	-	.	
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	exon	150765	150959	.	-	.	insertions 0 ; deletions 0
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	similarity	150765	150959	224	-	.	alignment_id 2 ; Query SPP00000033_1.0 ; Align 150960 105 195
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: gi|357434208|gb|JH378155.1|:subseq(1196959,301160) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00051, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 165
   Query range: 176 -> 258
  Target range: 150754 -> 145503

    177 : LeuSerValSerGlnSerMetSerGluGluGluArgGluLysValThrProLeuMetV :    196
          :!!..!||||||||||||||||||||||||||||||||||||:!!! !|||||||||:
          ValAspValSerGlnSerMetSerGluGluGluArgGluLysIleMetProLeuMetI
 150754 : GTTGATGTTAGCCAGAGTATGAGTGAGGAGGAACGGGAAAAGATAATGCCACTCATGA : 150697

    197 : alLysGlyPheArgAsp-AlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnT :    215
          !!||||||||| !!|||#|||:!!||||||! !||||||.!!||||||||||||||||
          leLysGlyPheTrpAsp#AlaSerGluGluGluGlyThrThrValThrGlyGlyGlnT
 150696 : TCAAAGGCTTTTGGGACAGCTTCTGAGGAGGAAGGAACTACAGTGACAGGTGGACAAA : 150639

    216 : hrValValAsnProTrpIleIleIleGlyGlyValAlaThrValValCysGlnProAs :    234
          ||||||||!.! !!|||   :!!|||||||||||| !!||||||!.!  ! !!  !  
          hrValValThrSerTrp---LeuIleGlyGlyValProThrValAlaThr***CysLe
 150638 : CGGTGGTCACCTCTTGG---CTTATCGGTGGGGTTCCCACTGTGGCAACTTAATGCTT : 150585

    235 : nGluPheIleMet  >>>> Target Intron 1 >>>>  ProAspSerAlaValV :    244
             !.!.  !:!!           5007 bp             !...|||||||||:
          uIleMetProLeu-+                         ++SerSerSerAlaValL
 150584 : AATAATGCCACTGtt.........................agAGCTCAAGTGCTGTGC : 145548

    245 : alGlyAspValLeuValLeuThrLysProLeuGlyThrGlnVal :    258
          !!||||||:!!|||:!!! !:!!:!!|||  !|||! !.!.:!!
          euGlyAspLeuLeuLeuSerSerGluProAlaGlyArgAsnIle
 145547 : TGGGAGATCTGCTGCTCTCTTCAGAGCCAGCAGGCAGGAATATT : 145504

vulgar: SPP00000033_1.0 176 258 . gi|357434208|gb|JH378155.1|:subseq(1196959,301160) 150754 145503 - 165 M 25 75 F 0 1 M 19 57 G 1 0 M 17 51 5 0 2 I 0 5003 3 0 2 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	gene	145504	150754	165	-	.	gene_id 3 ; sequence SPP00000033_1.0 ; gene_orientation +
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	cds	150571	150754	.	-	.	
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	exon	150571	150754	.	-	.	insertions 0 ; deletions 1 ; frameshifts 1
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	splice5	150569	150570	.	-	.	intron_id 1 ; splice_site "TT"
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	intron	145564	150570	.	-	.	intron_id 1
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	splice3	145564	145565	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	cds	145504	145563	.	-	.	
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	exon	145504	145563	.	-	.	insertions 0 ; deletions 0
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	similarity	145504	150754	165	-	.	alignment_id 3 ; Query SPP00000033_1.0 ; Align 150755 177 75 ; Align 150679 202 57 ; Align 150622 222 51 ; Align 145564 239 60
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: gi|357434208|gb|JH378155.1|:subseq(1196959,301160) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00051, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 118
   Query range: 21 -> 79
  Target range: 151175 -> 151002

     22 : GlyProAlaGlyLeuThrLeuGlyArgSerPheSerAsnTyrArgProPheGluProG :     41
          ||| !!|||!.!! !:!!|||||||||:!!||||||!:!! !!:! !!|||:!!||||
          GlySerAlaAlaSerSerLeuGlyArgAlaPheSerSerSerGlnSerPheGlnProG
 151175 : GGCTCCGCGGCCTCGTCTCTGGGTCGGGCCTTCTCGAGCTCCCAGTCCTTCCAGCCCC : 151118

     42 : lnAlaLeuGlyLeuSerProSerTrpArgLeu--ThrGlyPheSerGlyMetLysGly :     59
          |||||! !|||||||||! !|||||| !!|||##   ||| !!||||||! !|||! !
          lnAlaTrpGlyLeuSerLeuSerTrp***Leu##---GlyValSerGlyArgLysAsp
 151117 : AGGCATGGGGCCTCAGCCTGAGCTGGTGACTGAC---GGCGTCTCTGGCAGGAAGGAC : 151065

     60 : UnkGlyCysLysValProGlnGluAlaLeuLeuLysLeuLeuAlaGlyLeuThrArgP :     79
             |||||||||! !! !||||||||||||! !|||!!!|||||||||||||||||||
          ***GlyCysLysAspLeuGlnGluAlaLeuProLysPheLeuAlaGlyLeuThrArgP
 151064 : TGAGGCTGCAAGGACCTGCAGGAGGCACTACCCAAATTCCTGGCGGGCCTGACACGGC : 151005

     80 : ro :     79
          ||
          ro
 151004 : CC : 151003

vulgar: SPP00000033_1.0 21 79 . gi|357434208|gb|JH378155.1|:subseq(1196959,301160) 151175 151002 - 118 M 30 90 F 0 2 G 1 0 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	gene	151003	151175	118	-	.	gene_id 4 ; sequence SPP00000033_1.0 ; gene_orientation .
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	cds	151003	151175	.	-	.	
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	exon	151003	151175	.	-	.	insertions 0 ; deletions 1 ; frameshifts 2
gi|357434208|gb|JH378155.1|:subseq(1196959,301160)	exonerate:protein2genome:local	similarity	151003	151175	118	-	.	alignment_id 4 ; Query SPP00000033_1.0 ; Align 151176 22 90 ; Align 151084 53 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis