Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000033_1.0.fa -t ./exonerate/SPP00000033_1.0_5_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: gi|357434251|gb|JH378112.1|:subseq(26223648,301222) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1626
   Query range: 1 -> 448
  Target range: 151293 -> 149969

      2 : AlaGluAlaSerAlaThrGlyAlaCysGlyGluAlaMetAlaAlaAlaGluGlySer- :     21
          |||  !|||..!|||  !|||! !...!.!! !|||:!!||||||||||||||||||#
          AlaThrAlaGluAlaCysGlyGluAlaAlaAlaAlaValAlaAlaAlaGluGlySer#
 151293 : GCGACGGCGGAAGCCTGCGGAGAGGCGGCGGCGGCGGTGGCAGCTGCGGAAGGCTCCT : 151236

     22 : -SerGlyProAlaGlyLeuThrLeuGlyArgSerPheSerAsnTyrArgProPheGlu :     39
          #   ||||||||||||||||||||||||! !|||||||||!!.! !||||||||||||
          #---GlyProAlaGlyLeuThrLeuGlyProSerPheSerLysSerArgProPheGlu
 151235 : C---GGCCCAGCGGGCTTGACTCTGGGCCCGAGCTTCTCCAAGTCCCGGCCCTTCGAG : 151183

     40 : ProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMetLysG :     59
          ||||||||||||||||||||||||:!!|||!:!||||||||||||||||||! !||||
          ProGlnAlaLeuGlyLeuSerProAlaTrpGlnLeuThrGlyPheSerGlyLysLysG
 151182 : CCCCAGGCGTTGGGCCTCAGCCCGGCCTGGCAGCTGACGGGCTTCTCCGGCAAGAAGG : 151123

     60 : lyUnkGlyCysLysValProGlnGluAlaLeuLeuLysLeuLeuAlaGlyLeuThrAr :     78
          ||   |||||||||||||||||||||.!!||||||! !||||||||||||||||||||
          ly***GlyCysLysValProGlnGluThrLeuLeuThrLeuLeuAlaGlyLeuThrAr
 151122 : GCTGAGGCTGCAAGGTCCCGCAGGAGACGCTGCTCACACTCCTGGCGGGCCTGACGCG : 151066

     79 : gProAsp--ValArgProProLeuGlyArgGlyLeuValGlyGlyGlnGluGluAlaS :     97
          ||||!  ##! !||||||! !|||||| !!||||||||||||||||||! !|||||||
          gProAla##GlyArgProLeuLeuGlyGlyGlyLeuValGlyGlyGlnGlyGluAlaS
 151065 : GCCGGCGTGGGGAGGCCCCTACTGGGCGGGGGCCTGGTGGGGGGTCAGGGAGAGGCGT : 151007

     98 : erGlnGluAlaGlyLeuProAlaGlyAlaGlyProSerProThrPheProAlaLeuGl :    116
          ||||||||            .!!|||||||||||||||||||||||||||||||||||
          erGlnGlu------------ThrGlyAlaGlyProSerProThrPheProAlaLeuGl
 151006 : CCCAGGAA------------ACCGGAGCGGGCCCCAGCCCCACTTTTCCAGCCCTGGG : 150962

    117 : yIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuValGln :    135
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuValGln
 150961 : CATCGGGATGGACTCCTGCGTCATCCCCCTGAGGCACGGGGGCCTGTCGCTGGTGCAG : 150905

    136 : ThrThrAspPhePheTyrProLeuValGluAspProTyrMet--MetGlyArgIleAl :    154
          |||||||||||||||||||||||||||||||||||||||:!!##   |||||||||||
          ThrThrAspPhePheTyrProLeuValGluAspProTyrVal##---GlyArgIleAl
 150904 : ACCACGGACTTCTTTTACCCCTTGGTGGAAGATCCCTACGTGAT---GGGCGCATAGC : 150849

    155 : aCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsnMet :    173
          | !!||||||!.!! !||||||!!!|||||||||!.!||||||||||||||||||:!!
          aGlyAlaAsnAlaProSerAspPheTyrAlaMetAlaIleThrGluCysAspAsnVal
 150848 : TGGTGCCAACGCGCCGAGTGACTTCTACGCCATGGCCATTACTGAGTGTGACAACGTG : 150792

    174 : LeuMetLeuLeuSerValSerGlnSerMetSerGluGluGlu--ArgGluLysValTh :    192
          ||||||||||||||||||.!!|||!!!|||||||||||||||##   |||||||||||
          LeuMetLeuLeuSerValGlyGlnArgMetSerGluGluGlu##---GluLysValTh
 150791 : TTGATGTTACTCAGCGTCGGCCAGAGGATGAGTGAGGAGGAACT---GAAAAGGTAAC : 150736

    193 : rProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValThr :    211
          ||||!!!|||||||||||||||||||||:!!|||||||||||||||||||||||||||
          rProPheMetValLysGlyPheArgAspSerAlaGluGluGlyGlyThrAlaValThr
 150735 : GCCATTCATGGTCAAAGGCTTTCGGGATTCGGCTGAGGAAGGAGGGACTGCAGTGACC : 150679

    212 : GlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrValValC :    231
          |||!.!|||||||||:!!|||||||||:!!:!!|||||||||! !||||||!.!  !|
          GlyAlaGlnThrValLeuAsnProTrpValLeuIleGlyGlyGlyAlaThrAlaLysC
 150678 : GGTGCGCAAACGGTGCTCAACCCTTGGGTTCTAATCGGTGGAGGTGCCACTGCGAAAT : 150619

    232 : ysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValLe :    250
          ||||||||||||||||||||||||||||||||||||||!.!|||! !|||||||||||
          ysGlnProAsnGluPheIleMetProAspSerAlaValAlaGlyValValLeuValLe
 150618 : GCCAGCCAAATGAATTCATAATGCCCGACAGCGCGGTGGCTGGGGTTGTGCTGGTATT : 150562

    251 : uThrLysProLeuGlyThrGlnValAlaValAsnAlaHis-GlnTrpLeuAspAsnPr :    269
          ||||!!.|||||||||||||||||||||||||||||||||#:!!||||||||||||||
          uThrAsnProLeuGlyThrGlnValAlaValAsnAlaHis#GluTrpLeuAspAsnPr
 150561 : AACCAACCCGTTAGGAACCCAGGTTGCTGTCAATGCCCACCGAATGGCTGGATAATCC : 150504

    270 : oGluArgTrpAsn-LysValLysMetValValSerArgGluGluValGluLeuAlaTy :    288
          |||||||||||||#|||      |||||||||||||||||||||||||||||||||||
          oGluArgTrpAsn#Lys------MetValValSerArgGluGluValGluLeuAlaTy
 150503 : TGAAAGATGGAATAAAG------ATGGTGGTCTCCAGAGAAGAGGTGGAGCTGGCGTA : 150452

    289 : rGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHis :    307
          ||||||||||||||||!..|||||||||||||||||||||||||||||||||||||||
          rGlnGluAlaMetPheArgMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHis
 150451 : TCAGGAAGCCATGTTCAGGATGGCTACCCTCAACAGAACTGCTGCAGGTTTAATGCAC : 150395

    308 : ThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerG :    327
          .!!|||||||||||||||||||||||||||||||||!!.||||||! !||||||||||
          AlaPheAsnAlaHisAlaAlaThrAspIleThrGlyLeuGlyIleProGlyHisSerG
 150394 : GCATTTAATGCCCATGCTGCCACAGATATCACAGGCTTAGGCATTCCAGGACACTCCC : 150335

    328 : lnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIl :    346
          ||||||||.!!||||||||||||||||||:!!||||||||||||||||||||||||||
          lnAsnLeuThrLysGlnGlnArgAsnGluLeuSerPheValIleHisAsnLeuProIl
 150334 : AGAACCTCACGAAACAACAAAGAAACGAACTGTCCTTTGTTATTCATAATCTGCCAAT : 150278

    347 : eIleAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuGlnGly :    365
          ||||||||||:!!|||||| !!|||||||||||||||!:!||||||||||||||||||
          eIleAlaLysValAlaAlaPheSerLysAlaSerGlyGlnPheGlyLeuLeuGlnGly
 150277 : AATTGCCAAGGTGGCTGCCTTCAGCAAGGCCAGTGGACAGTTTGGGCTCCTTCAAGGA : 150221

    366 : ThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaA :    385
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaA
 150220 : ACCTCAGCTGAAACCTCTGGGGGATTACTGATTTGTCTGCCTAGAGAACAAGCTGCTC : 150161

    386 : rgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleVa :    404
          |||||||||||:!!! !|||||||||||||||||||||.!!||||||!.!||||||||
          rgPheCysSerLysThrLysSerSerLysTyrGlyGluSerHisGlnValTrpIleVa
 150160 : GATTTTGTTCCAAAACCAAATCCTCCAAGTACGGAGAGAGTCACCAAGTGTGGATTGT : 150104

    405 : lGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIle :    423
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIle
 150103 : TGGCATTGTGGAAAAGGGAAACCGAACGGCCCGGATCATTGACAAGCCGCGAGTTATT : 150047

    424 : GluValLeuProArgGlyAlaThrAlaAlaValLeuAlaProAspSerSerAsnAlaS :    443
          |||:!!|||||| !!|||||||||||||||!.!||||||||||||!:!||||||||||
          GluLeuLeuProCysGlyAlaThrAlaAlaAlaLeuAlaProAspAsnSerAsnAlaS
 150046 : GAACTCCTGCCTTGTGGGGCCACAGCTGCTGCTCTTGCTCCTGACAATTCAAATGCCT : 149987

    444 : erSerGluProSerSer :    448
          |||||||||||!!!|||
          erSerGluProCysSer
 149986 : CCTCTGAGCCTTGCTCT : 149970

vulgar: SPP00000033_1.0 1 448 . gi|357434251|gb|JH378112.1|:subseq(26223648,301222) 151293 149969 - 1626 M 19 57 F 0 2 G 1 0 M 59 177 F 0 2 M 19 57 G 4 0 M 46 138 F 0 2 G 1 0 M 37 111 F 0 2 G 1 0 M 75 225 F 0 1 M 10 30 F 0 1 M 1 3 G 2 0 M 172 516
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434251|gb|JH378112.1|:subseq(26223648,301222)	exonerate:protein2genome:local	gene	149970	151293	1626	-	.	gene_id 1 ; sequence SPP00000033_1.0 ; gene_orientation .
gi|357434251|gb|JH378112.1|:subseq(26223648,301222)	exonerate:protein2genome:local	cds	149970	151293	.	-	.	
gi|357434251|gb|JH378112.1|:subseq(26223648,301222)	exonerate:protein2genome:local	exon	149970	151293	.	-	.	insertions 0 ; deletions 9 ; frameshifts 10
gi|357434251|gb|JH378112.1|:subseq(26223648,301222)	exonerate:protein2genome:local	similarity	149970	151293	1626	-	.	alignment_id 1 ; Query SPP00000033_1.0 ; Align 151294 2 57 ; Align 151235 22 177 ; Align 151056 81 57 ; Align 150999 104 138 ; Align 150859 151 111 ; Align 150746 189 225 ; Align 150520 264 30 ; Align 150489 274 3 ; Align 150486 277 516
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis