Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000032_1.0.fa -t ./exonerate/SPP00000032_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Homo sapiens # Complete
        Target: gi|357434180|gb|JH378183.1|:subseq(6766614,301175) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00079, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1966
   Query range: 0 -> 392
  Target range: 149999 -> 151175

      1 : MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgL :     20
          ||||||||| !!||||||||||||||||||||||||||||||||||||||||||||||
          MetSerThrTrpGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgL
 150000 : ATGTCTACGTGGGAGTCCTTTAACCCGGAAAGTTACGAATTGGACAAGAGCTTCCGGC : 150057

     21 : euThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGl :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGl
 150058 : TAACCAGATTCACTGAACTGAAGGGCACAGGCTGCAAAGTGCCCCAAGATGTCCTGCA : 150114

     40 : nLysLeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGly :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nLysLeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGly
 150115 : GAAATTGCTGGAATCTTTGCAGGAGAACCACTTTCAAGAAGATGAGCAGTTTCTGGGA : 150171

     59 : AlaValMetProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgHisG :     78
          |||:!!! !|||||||||||||||||||||||||||! !||||||||||||||||||.
          AlaIleThrProArgLeuGlyIleGlyMetAspThrTyrValIleProLeuArgHisS
 150172 : GCCATTACGCCAAGGCTTGGCATTGGAATGGATACTTATGTCATTCCTTTGAGGCACA : 150231

     79 : lyGlyLeuSerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTy :     97
          !!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erGlyLeuSerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTy
 150232 : GTGGGCTTTCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGACGACCCTTA : 150288

     98 : rMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyVal :    116
          ||||||||||||||||||||||.!!||||||||||||||||||||||||||| !!|||
          rMetMetGlyArgIleAlaCysThrAsnValLeuSerAspLeuTyrAlaMetArgVal
 150289 : CATGATGGGCAGGATAGCATGTACCAATGTCCTCAGTGACCTCTACGCAATGCGGGTC : 150345

    117 : ThrGluCysAspAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArgG :    136
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ThrGluCysAspAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArgG
 150346 : ACAGAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACAGACAGGG : 150405

    137 : luArgAspLysValMetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGluAl :    155
          |||||:!!||||||||||||||||||||||||||||||||||||||||||||||||||
          luArgAsnLysValMetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGluAl
 150406 : AAAGGAATAAAGTGATGCCTCTGATTATCCAAGGTTTTAAAGACGCAGCTGAGGAAGC : 150462

    156 : aGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIleValLeuGlyGly :    174
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          aGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIleValLeuGlyGly
 150463 : AGGAACATCTGTAACGGGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGA : 150519

    175 : ValAlaThrThrValCysGlnProAsnGluPheIleMetProAspAsnAlaValProG :    194
          ||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||
          ValAlaThrThrValCysGlnProAsnGluPheIleMetProAsnAsnAlaValProG
 150520 : GTCGCTACCACTGTCTGCCAGCCCAATGAATTTATCATGCCAAACAATGCAGTGCCAG : 150579

    195 : lyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAlaValHisGl :    213
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAlaValHisGl
 150580 : GGGACGTGCTGGTGTTGACAAAACCCCTTGGGACACAGGTGGCAGTGGCTGTGCACCA : 150636

    214 : nTrpLeuAspIleProGluLysTrpAsnLysIleLysLeuValValThrGlnGluAsp :    232
          ||||||||||||||||||||||! !|||||||||||||||||||||||||||||||||
          nTrpLeuAspIleProGluLysLeuAsnLysIleLysLeuValValThrGlnGluAsp
 150637 : GTGGCTGGATATTCCTGAGAAATTGAATAAGATTAAGCTAGTTGTCACCCAAGAAGAT : 150693

    233 : ValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArgThrAlaA :    252
          ||||||||||||||||||||||||||||||||||||  !|||||||||||||||||||
          ValGluLeuAlaTyrGlnGluAlaMetMetAsnMetLeuArgLeuAsnArgThrAlaA
 150694 : GTAGAGCTGGCCTACCAGGAGGCGATGATGAATATGCTGAGGCTCAACAGGACAGCTG : 150753

    253 : laGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIl :    271
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIl
 150754 : CAGGACTCATGCACACATTCAACGCCCATGCGGCCACTGACATCACAGGCTTCGGGAT : 150810

    272 : eLeuGlyHisAlaGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIle :    290
          ||||||||||!.!|||||||||||||||||||||||||||||||||||||||:!!|||
          eLeuGlyHisValGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheIleIle
 150811 : TTTGGGCCATGTGCAGAACCTGGCCAAGCAGCAGAGAAACGAGGTGTCGTTCATCATT : 150867

    291 : HisAsnLeuProValLeuAlaLysMetAlaAlaValSerLysAlaCysGlyAsnMetP :    310
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          HisAsnLeuProValLeuAlaLysMetAlaAlaValSerLysAlaCysGlyAsnMetP
 150868 : CACAACCTCCCGGTGCTGGCCAAGATGGCTGCAGTGAGCAAGGCCTGCGGAAACATGT : 150927

    311 : heGlyLeuMetHisGlyThrCysProGluThrSerGlyGlyLeuLeuIleCysLeuPr :    329
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          heGlyLeuMetHisGlyThrCysProGluThrSerGlyGlyLeuLeuIleCysLeuPr
 150928 : TTGGCCTCATGCACGGGACCTGCCCGGAGACCTCAGGCGGCCTTCTGATCTGTTTACC : 150984

    330 : oArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGly :    348
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          oArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGly
 150985 : ACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCTCCCAAATATGGTGAAGGC : 151041

    349 : HisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleA :    368
          ||||||||||||||||||||||||||||||||||||||||||||||||!:!|||||||
          HisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaLysIleIleA
 151042 : CACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAAAATCATAG : 151101

    369 : spLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnProTh :    387
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnProTh
 151102 : ACAAACCCCGGATCATCGAGGTCGCACCGCAAGTGGCCACTCAAAACGTCAATCCCAC : 151158

    388 : rProGlyAlaThrSer :    392
          ||||||||||||||||
          rProGlyAlaThrSer
 151159 : ACCGGGGGCCACCTCT : 151175

vulgar: SPP00000032_1.0 0 392 . gi|357434180|gb|JH378183.1|:subseq(6766614,301175) 149999 151175 + 1966 M 392 1176
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434180|gb|JH378183.1|:subseq(6766614,301175)	exonerate:protein2genome:local	gene	150000	151175	1966	+	.	gene_id 1 ; sequence SPP00000032_1.0 ; gene_orientation .
gi|357434180|gb|JH378183.1|:subseq(6766614,301175)	exonerate:protein2genome:local	cds	150000	151175	.	+	.	
gi|357434180|gb|JH378183.1|:subseq(6766614,301175)	exonerate:protein2genome:local	exon	150000	151175	.	+	.	insertions 0 ; deletions 0
gi|357434180|gb|JH378183.1|:subseq(6766614,301175)	exonerate:protein2genome:local	similarity	150000	151175	1966	+	.	alignment_id 1 ; Query SPP00000032_1.0 ; Align 150000 1 1176
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis