Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000031_1.0.fa -t ./exonerate/SPP00000031_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo sapiens # Complete
        Target: gi|357434092|gb|JH378271.1|:subseq(3075523,300991) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00167, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 545
   Query range: 0 -> 115
  Target range: 149999 -> 150991

      1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProG :     20
          |||!:!||||||||||||||||||||||||||||||! !|||! !:!!||||||||||
          MetAsnGlyGluProGlyGlnThrSerValAlaProLeuProGlyLysValGluProG
 150000 : ATGAACGGGGAGCCGGGGCAGACGTCCGTAGCGCCCCTTCCCGGGAAGGTCGAGCCGG : 150057

     21 : lySerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >> :     30
          |||||||||||||||||||||||||||||{||}            113 bp       
          lySerGlyValArgIleValValGluTyr{Cy}++                       
 150058 : GCAGTGGGGTCCGCATCGTGGTGGAGTAC{TG}gt....................... : 150091

     31 : >>  {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLys :     47
              {|}|||||||||||||||||||||||||||||||||||||||||||||||||||
            ++{s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLys
 150092 : ..ag{T}GAACCCTGCGGCTTCGAGGCGACCTACCTGGAGCTGGCCAGTGCTGTGAAG : 150251

     48 : GluGlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Tar :     63
          |||||||||||||||||||||||||||||||||||||||||||||{|}          
          GluGlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++        
 150252 : GAGCAGTATCCGGGCATTGAGATCGAGTCGCGCCTGGGGGGCACA{G}gt........ : 150302

     64 : get Intron 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPh :     75
            452 bp           {||}|||||||||||||||||||||||||||||||||||
                           ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPh
 150303 : .................ag{GC}GCCTTTGAGATAGAGATCAATGGACAACTGGTGTT : 150787

     76 : eSerLysLeuGluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intr :     89
          ||||||||||||||||||||||||||||||||||||||||            82 bp 
          eSerLysLeuGluAsnGlyGlyPheProTyrGluLysAsp++                
 150788 : CTCCAAGCTGGAGAACGGGGGCTTTCCCTATGAGAAAGATgt................ : 150831

     90 : on 3 >>>>  LeuIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLy :    104
                     |||||||||||||||||||||||||||||||||||| !!||||||||
                   ++LeuIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLy
 150832 : .........agCTCATTGAGGCCATCCGAAGAGCCAGCAACGGAGAACCCCTAGAAAA : 150956

    105 : sIleThrAsnSerArgProProCysValIleLeu :    115
          |||||||||||||||||||||||||:!!||||||
          sIleThrAsnSerArgProProCysIleIleLeu
 150957 : GATCACCAACAGCCGTCCTCCCTGCATCATCCTG : 150991

vulgar: SPP00000031_1.0 0 115 . gi|357434092|gb|JH378271.1|:subseq(3075523,300991) 149999 150991 + 545 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 448 3 0 2 S 1 2 M 25 75 5 0 2 I 0 78 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	gene	150000	150991	545	+	.	gene_id 1 ; sequence SPP00000031_1.0 ; gene_orientation +
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	cds	150000	150088	.	+	.	
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	exon	150000	150088	.	+	.	insertions 0 ; deletions 0
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	splice5	150089	150090	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	intron	150089	150201	.	+	.	intron_id 1
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	splice3	150200	150201	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	cds	150202	150299	.	+	.	
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	exon	150202	150299	.	+	.	insertions 0 ; deletions 0
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	splice5	150300	150301	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	intron	150300	150751	.	+	.	intron_id 2
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	splice3	150750	150751	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	cds	150752	150828	.	+	.	
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	exon	150752	150828	.	+	.	insertions 0 ; deletions 0
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	splice5	150829	150830	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	intron	150829	150910	.	+	.	intron_id 3
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	splice3	150909	150910	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	cds	150911	150991	.	+	.	
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	exon	150911	150991	.	+	.	insertions 0 ; deletions 0
gi|357434092|gb|JH378271.1|:subseq(3075523,300991)	exonerate:protein2genome:local	similarity	150000	150991	545	+	.	alignment_id 1 ; Query SPP00000031_1.0 ; Align 150000 1 87 ; Align 150203 31 96 ; Align 150754 64 75 ; Align 150911 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis