Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000030_1.0.fa -t ./exonerate/SPP00000030_1.0_3_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo sapiens # Complete
        Target: gi|357434224|gb|JH378139.1|:subseq(4341761,300152) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 218
   Query range: 1 -> 86
  Target range: 149999 -> 150292

      2 : AlaLeuAlaValArgValValTyrCysGlyAlaUnkGlyTyrLysSerLysTyrLeuG :     21
          ||||||!.! !!!:!|||:!!|||||||||.!!   |||!! ||||||||||||!!!|
          AlaLeuValPheGlnValIleTyrCysGlyThr***Gly***LysSerLysTyrPheG
 150000 : GCTCTTGTGTTCCAAGTCATTTATTGTGGCACTTAAGGCTAAAAGTCCAAGTATTTTC : 150057

     22 : lnLeuLysLysLysLeuGluAspGluPheProGlyArgLeuAspIleCysGlyGluGl :     40
          ||||||||||||||||||||||||||!!. !! !! !!||||||||||||.!!.!.||
          lnLeuLysLysLysLeuGluAspGluLeuSerArgCysLeuAspIleCysSerAsnGl
 150058 : AGCTCAAGAAGAAGTTAGAAGATGAGTTATCCAGATGCCTGGACATCTGCAGCAATGG : 150114

     41 : yThrProGlnAlaThrGlyPhePheGluValMetVal{A}  >>>> Target Intr :     53
          |:!!||||||!.!|||  !||||||||||||||||||{!}            38 bp 
          ySerProGlnValThrLysPhePheGluValMetVal{V}--                
 150115 : TTCTCCCCAGGTCACCAAGTTCTTTGAAGTGATGGTA{G}ta................ : 150156

     54 : on 1 >>>>  {la}GlyLysLeuIleHisSerLysLysLysGlyAspGlyTyrValA :     68
                     {.!}  !     !     !|||! !!:!!:!||||||||||||:!! 
                   ++{al}TyrGlySerTrpPheSerThrArgArgGlyAspGlyTyrIleL
 150157 : .........ag{TT}TATGGTAGTTGGTTCTCTACAAGAAGAGGTGATGGATACATTA : 150236

     69 : spThrGluSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGln :     86
          !   !|||!:!||||||||||||||||||.!!.!!|||||||||!.!|||||||||
          ysGlyGluAsnLysPheLeuLysLeuValThrThrIleLysAlaGlyLeuAlaGln
 150237 : AGGGGGAGAACAAATTTCTGAAGCTAGTGACCACCATCAAAGCTGGCTTGGCTCAA : 150292

vulgar: SPP00000030_1.0 1 86 . gi|357434224|gb|JH378139.1|:subseq(4341761,300152) 149999 150292 + 218 M 51 153 S 0 1 5 0 2 I 0 34 3 0 2 S 1 2 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	gene	150000	150292	218	+	.	gene_id 1 ; sequence SPP00000030_1.0 ; gene_orientation +
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	cds	150000	150153	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	exon	150000	150153	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	splice5	150154	150155	.	+	.	intron_id 1 ; splice_site "TA"
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	intron	150154	150191	.	+	.	intron_id 1
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	splice3	150190	150191	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	cds	150192	150292	.	+	.	
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	exon	150192	150292	.	+	.	insertions 0 ; deletions 0
gi|357434224|gb|JH378139.1|:subseq(4341761,300152)	exonerate:protein2genome:local	similarity	150000	150292	218	+	.	alignment_id 1 ; Query SPP00000030_1.0 ; Align 150000 2 153 ; Align 150194 54 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis