Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000027_1.0.fa -t ./exonerate/SPP00000027_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo sapiens # Complete
        Target: gi|357434120|gb|JH378243.1|:subseq(2671761,300479) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00139, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 712
   Query range: 17 -> 226
  Target range: 149853 -> 150479

     18 : ValProAlaProSerGlyProAspSerGlyGlnProLeuAlaAlaAlaValAlaGluL :     37
          |||||||||||||||.!!|||!!:..!|||! !||||||!.!|||.!!|||!.!||||
          ValProAlaProSerSerProGluAspGlyLeuProLeuValAlaThrValGlyGluL
 149854 : GTCCCAGCCCCAAGCAGCCCTGAGGATGGGCTGCCCTTGGTGGCCACTGTGGGTGAGC : 149911

     38 : euProValLeuAspAlaArgGlyGlnArgValProPheGlyAlaLeuPhe--ArgGlu :     55
          ||! !|||||||||  !!.! !!|||||||||! !|||  ! !!||||||##   |||
          euLeuValLeuAspIleHisArgGlnArgValLeuPheHisProLeuPhe##---Glu
 149912 : TGCTGGTGCTGGACATTCACAGGCAGAGGGTGCTGTTCCACCCACTGTTCTG---GAG : 149964

     56 : ArgArgAlaValValValPheValArgHisPheLeuCysTyrIleCysLysGluTyrV :     75
           !! !!|||:!!|||||| ! ||| !!|||||||||||||||||||||||||||||||
          Cys***AlaMetValValValValTrpHisPheLeuCysTyrIleCysLysGluTyrV
 149965 : TGCTGAGCCATGGTGGTGGTAGTGTGGCATTTCCTGTGTTACATCTGCAAGGAATACG : 150024

     76 : alGluAspLeuAlaLysIleProArgSerPheLeuGlnGluAlaAsnValThrLeuIl :     94
          |||||||||||||||||||||||!:!||||||||||||:!!|||||||||||||||!!
          alGluAspLeuAlaLysIleProLysSerPheLeuGlnLysAlaAsnValThrLeuMe
 150025 : TAGAGGATCTGGCCAAAATCCCCAAGAGTTTCTTACAAAAAGCAAATGTCACCCTCAT : 150081

     95 : eValIleGlyGlnSerSerTyrHisHisIleGluPro-PheCysLysLeuThrGlyTy :    113
          :|||||||||||| !!|||||||||||||||||||||#||||||||||||||||||||
          tValIleGlyGlnProSerTyrHisHisIleGluPro#PheCysLysLeuThrGlyTy
 150082 : GGTGATTGGACAGCCATCCTATCATCATATAGAGCCTTTTTTGCAAACTGACTGGATA : 150139

    114 : rSerHisGluIleTyrValAspProGluArgGluIleTyrLysArgLeuGlyMetLys :    132
          |||||||:!!!!::!!|||||||||:!!||||||||||||! !|||||||||||||||
          rSerHisLysMetHisValAspProLysArgGluIleTyrIleArgLeuGlyMetLys
 150140 : TTCTCATAAAATGCATGTCGATCCTAAGAGGGAAATTTATATAAGATTGGGAATGAAA : 150196

    133 : ArgGlyGluGluIleAlaSerSerGlyGlnSerProHisIleLysSerAsnLeuLeuS :    152
          |||||||||:!!||||||! !|||||||||||||||||||||!!.|||||||||||||
          ArgGlyGluLysIleAlaPheSerGlyGlnSerProHisIleAsnSerAsnLeuLeuS
 150197 : AGAGGTGAGAAAATTGCTTTCTCAGGACAGAGTCCCCACATAAATTCAAATCTACTCT : 150256

    153 : er--GlySerLeuGlnSerLeuTrpArgAlaValThrGlyProLeuPheAspPheGln :    170
          ||##   |||||||||!:!|||!    !||||||||||||  !|||||||||||||||
          er##---SerLeuGlnAsnLeu******AlaValThrGlyPheLeuPheAspPheGln
 150257 : CAGA---AGCCTTCAGAACCTGTAATAGGCAGTAACTGGATTTCTCTTTGATTTTCAA : 150309

    171 : GlyAspProAlaGlnGlnGlyGlyThrLeuIleLeuGlyProGlyAsnAsnIleHisP :    190
          |||||||||  !||||||.!!||||||:!!|||||||||||| !!|||||||||||||
          GlyAspProPheGlnGlnSerGlyThrIleIleLeuGlyProCysAsnAsnIleHisP
 150310 : GGAGACCCATTTCAGCAAAGTGGAACTATCATTTTAGGTCCATGTAACAACATTCATT : 150369

    191 : heIleHisArgAspArgAsnArgLeuAspHisLysProIleAsnSerValLeuGlnLe :    209
          |||||!.! !!|||||||||||||||||||||||||||||||||||||||||||||||
          heIleArgCysAspArgAsnArgLeuAspHisLysProIleAsnSerValLeuGlnLe
 150370 : TTATACGCTGTGATAGGAATAGGTTGGATCACAAACCTATCAACTCTGTTTTACAGCT : 150426

    210 : uValGlyValGlnHisValAsnPheThrAsnArgProSerValIleHisVal :    226
          ||||||||||||||||:!!||||||||||||||||||||||||||||||:!!
          uValGlyValGlnHisLeuAsnPheThrAsnArgProSerValIleHisIle
 150427 : TGTAGGAGTTCAGCATTTGAACTTTACGAACAGACCTTCAGTTATTCATATA : 150479

vulgar: SPP00000027_1.0 17 226 . gi|357434120|gb|JH378243.1|:subseq(2671761,300479) 149853 150479 + 712 M 36 108 F 0 2 G 1 0 M 52 156 F 0 1 M 46 138 F 0 2 G 1 0 M 73 219
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434120|gb|JH378243.1|:subseq(2671761,300479)	exonerate:protein2genome:local	gene	149854	150479	712	+	.	gene_id 1 ; sequence SPP00000027_1.0 ; gene_orientation .
gi|357434120|gb|JH378243.1|:subseq(2671761,300479)	exonerate:protein2genome:local	cds	149854	150479	.	+	.	
gi|357434120|gb|JH378243.1|:subseq(2671761,300479)	exonerate:protein2genome:local	exon	149854	150479	.	+	.	insertions 0 ; deletions 2 ; frameshifts 5
gi|357434120|gb|JH378243.1|:subseq(2671761,300479)	exonerate:protein2genome:local	similarity	149854	150479	712	+	.	alignment_id 1 ; Query SPP00000027_1.0 ; Align 149854 18 108 ; Align 149964 55 156 ; Align 150121 107 138 ; Align 150261 154 219
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis