Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000027_1.0.fa -t ./exonerate/SPP00000027_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo sapiens # Complete
        Target: gi|357434107|gb|JH378256.1|:subseq(2179004,300659) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00152, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1046
   Query range: 6 -> 226
  Target range: 150659 -> 149999

      7 : ValThrArgGlnValSerGlyAlaAlaAlaLeuValProAlaProSerGlyProAspS :     26
          |||||||||||||||||||||!.!||||||! !|||! !|||||||||! !|||!!: 
          ValThrArgGlnValSerGlyGlyAlaAlaArgValLeuAlaProSerAspProGluA
 150659 : GTCACACGGCAGGTTAGCGGTGGCGCCGCCCGGGTCCTGGCCCCAAGCGACCCCGAGC : 150602

     27 : erGlyGlnProLeuAlaAlaAlaValAlaGluLeuProValLeuAspAlaArgGlyGl :     45
          !!|||||| !!|||||||||||||||||||||||||||||||||||||||||| !!||
          rgGlyGlnSerLeuAlaAlaAlaValAlaGluLeuProValLeuAspAlaArgArgGl
 150601 : GCGGGCAGTCCCTGGCGGCCGCCGTGGCCGAGCTACCGGTGCTGGACGCCCGCAGGCA : 150545

     46 : nArgValProPheGlyAlaLeuPheArgGluArgArgAlaValValValPheValArg :     64
          |!:!|||||||||||||||||||||||||||||||||.!!||||||||||||:!!|||
          nGlnValProPheGlyAlaLeuPheArgGluArgArgThrValValValPheMetArg
 150544 : GCAGGTGCCGTTCGGCGCACTGTTCCGGGAGCGCCGCACCGTGGTGGTGTTCATGCGG : 150488

     65 : HisPheLeuCysTyrIleCysLysGluTyrValGluAspLeuAlaLysIleProArgS :     84
          ||||||||||||||||||||||||:!!||||||||||||||||||!:!||||||!:!|
          HisPheLeuCysTyrIleCysLysLysTyrValGluAspLeuAlaArgIleProLysS
 150487 : CATTTCCTGTGTTACATCTGCAAGAAATACGTGGAGGATCTGGCCAGAATCCCCAAGA : 150428

     85 : erPheLeuGlnGluAlaAsnValThrLeuIleValIleGlyGlnSerSerTyrHisHi :    103
          |||||||||||||||||:!!||||||||||||||||||||||||||||||||||||||
          erPheLeuGlnGluAlaAspValThrLeuIleValIleGlyGlnSerSerTyrHisHi
 150427 : GTTTCTTACAAGAAGCAGATGTCACCTTGATAGTGATCGGACAGTCATCCTACCATCA : 150371

    104 : sIleGluProPheCysLysLeuThrGlyTyrSerHisGluIleTyrValAspProGlu :    122
          ||||||| !!||||||||||||||||||||||||||||||||||||||||||||||||
          sIleGluSerPheCysLysLeuThrGlyTyrSerHisGluIleTyrValAspProGlu
 150370 : TATTGAGTCTTTCTGCAAACTGACTGGATATTCTCATGAAATCTATGTCGATCCTGAG : 150314

    123 : ArgGluIleTyrLysArgLeuGlyMetLysArgGlyGluGluIleAlaSerSerGlyG :    142
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgGluIleTyrLysArgLeuGlyMetLysArgGlyGluGluIleAlaSerSerGlyG
 150313 : AGAGAAATTTATAAAAGATTGGGAATGAAAAGAGGTGAAGAAATTGCCTCCTCAGGAC : 150254

    143 : lnSerProHisIleLysSerAsnLeuLeuSerGlySerLeuGlnSerLeuTrpArgAl :    161
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lnSerProHisIleLysSerAsnLeuLeuSerGlySerLeuGlnSerLeuTrpArgAl
 150253 : AGAGCCCCCACATAAAGTCAAATCTACTCTCAGGAAGCCTTCAGAGCCTGTGGCGGGC : 150197

    162 : aValThrGlyProLeuPheAspPheGlnGlyAspProAlaGlnGlnGlyGlyThrLeu :    180
          |||||||||||||||||||:!!||||||||||||||||||||||||||||||||||||
          aValThrGlyProLeuPheAsnPheGlnGlyAspProAlaGlnGlnGlyGlyThrLeu
 150196 : AGTGACCGGCCCTCTCTTTAATTTTCAAGGAGACCCAGCTCAGCAAGGTGGAACCCTC : 150140

    181 : IleLeuGlyProGlyAsnAsnIleHisPheIleHisArgAspArgAsnArgLeuAspH :    200
          ||||||||||||||||||||||||||||||||| !!||||||||||||||||||||||
          IleLeuGlyProGlyAsnAsnIleHisPheIleAspArgAspArgAsnArgLeuAspH
 150139 : ATTTTAGGTCCAGGTAACAACATCCATTTTATAGACCGTGATAGGAATAGGTTGGATC : 150080

    201 : isLysProIleAsnSerValLeuGlnLeuValGlyValGlnHisValAsnPheThrAs :    219
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          isLysProIleAsnSerValLeuGlnLeuValGlyValGlnHisValAsnPheThrAs
 150079 : ACAAACCTATCAACTCTGTTTTACAGCTTGTAGGAGTTCAGCATGTGAACTTTACAAA : 150023

    220 : nArgProSerValIleHisVal :    226
          ||||||||||||||||||||||
          nArgProSerValIleHisVal
 150022 : CAGGCCTTCAGTCATCCATGTG : 150000

vulgar: SPP00000027_1.0 6 226 . gi|357434107|gb|JH378256.1|:subseq(2179004,300659) 150659 149999 - 1046 M 220 660
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434107|gb|JH378256.1|:subseq(2179004,300659)	exonerate:protein2genome:local	gene	150000	150659	1046	-	.	gene_id 1 ; sequence SPP00000027_1.0 ; gene_orientation .
gi|357434107|gb|JH378256.1|:subseq(2179004,300659)	exonerate:protein2genome:local	cds	150000	150659	.	-	.	
gi|357434107|gb|JH378256.1|:subseq(2179004,300659)	exonerate:protein2genome:local	exon	150000	150659	.	-	.	insertions 0 ; deletions 0
gi|357434107|gb|JH378256.1|:subseq(2179004,300659)	exonerate:protein2genome:local	similarity	150000	150659	1046	-	.	alignment_id 1 ; Query SPP00000027_1.0 ; Align 150660 7 660
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis