Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000026_1.0.fa -t ./exonerate/SPP00000026_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo sapiens # Complete
        Target: gi|357434097|gb|JH378266.1|:subseq(40982,310961) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00162, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1138
   Query range: 0 -> 229
  Target range: 149999 -> 160961

      1 : MetSerPheLeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaG :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetSerPheLeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaG
 150000 : ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCGG : 150057

     21 : lyAlaLeuGlyAlaAlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSe :     39
          |||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||
          lyAlaLeuGlyAlaAlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspMetPheLeuSe
 150058 : GAGCCCTGGGGGCTGCTGCCTTGGCACTGCTGCTGGCCAACACAGACATGTTTCTGTC : 150114

     40 : rLysProGlnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGlu :     58
          ||||||||||||||||||||||||||||||||||||||||||||||!!.|||||||||
          rLysProGlnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuAsnThrLeuGlu
 150115 : CAAGCCCCAGAAAGCGGCACTGGAGTACCTGGAGGACATTGACCTGAACACACTGGAG : 150171

     59 : Lys{G}  >>>> Target Intron 1 >>>>  {lu}ProArgThrPheLysAlaL :     67
          |||{|}           2075 bp           {||}|||||||||!!.|||||||
          Lys{G}++                         ++{lu}ProArgThrLeuLysAlaL
 150172 : AAG{G}gt.........................ag{AA}CCAAGGACTTTGAAAGCAA : 152273

     68 : ysGluLeuTrpGluLysAsnGlyAlaValIleMetAlaValArgArgProGlyCysPh :     86
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysGluLeuTrpGluLysAsnGlyAlaValIleMetAlaValArgArgProGlyCysPh
 152274 : AGGAACTATGGGAAAAAAATGGAGCTGTGATTATGGCTGTGCGGAGGCCAGGCTGTTT : 152330

     87 : eLeuCysArgGlu  >>>> Target Intron 2 >>>>  GluAlaAlaAspLeuS :     96
          |||||||||||||           3334 bp           ||||||||||||||||
          eLeuCysArgGlu++                         ++GluAlaAlaAspLeuS
 152331 : CCTCTGTCGAGAGgt.........................agGAAGCTGCGGATCTGT : 155694

     97 : erSerLeuLysSerMetLeuAspGlnLeuGlyValProLeuTyrAlaValValLysGl :    115
          ||||||||||| !!! !||||||:!!||||||||||||||||||||||||||||||||
          erSerLeuLysProLysLeuAspGluLeuGlyValProLeuTyrAlaValValLysGl
 155695 : CCTCCCTGAAACCCAAGTTGGATGAGCTTGGCGTCCCTCTCTATGCAGTGGTAAAGGA : 155751

    116 : uHisIleArgThrGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeu :    134
          |||||||!:!||||||||||||||||||||||||||||||||||||||||||||||||
          uHisIleLysThrGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeu
 155752 : GCACATCAAGACTGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTG : 155808

    135 : AspGluLys  >>>> Target Intron 3 >>>>  LysLysPheTyrGlyProGl :    144
          |||||||||           1332 bp           ||||||||||||||||||||
          AspGluLys++                         ++LysLysPheTyrGlyProGl
 155809 : GATGAAAAGgt.........................agAAAAAGTTCTATGGTCCACA : 157170

    145 : nArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePhe :    163
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePhe
 157171 : AAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTACAACTTCTTC : 157227

    164 : ArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheIleLeuGlyG :    183
          ||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||
          ArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheValLeuGlyG
 157228 : CGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCGTCCTCGGGG : 157287

    184 : lyValPheValValGlySerGlyLysGln  >>>> Target Intron 4 >>>>   :    193
          |||||||||||||||||||||||||||||           3534 bp           
          lyValPheValValGlySerGlyLysGln++                         ++
 157288 : GAGTTTTTGTGGTGGGATCAGGAAAGCAGgt.........................ag : 160849

    194 : GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuLeuSerV :    212
          |||:!!||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyValLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuLeuSerV
 160850 : GGCGTTCTTCTCGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAACCTACTTTCTG : 160908

    213 : alLeuGluAlaAlaLysMetIleLysProGlnThrLeuAlaSerGluLysLys :    229
          |||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLeuGluAlaAlaLysMetIleLysProGlnThrLeuAlaSerGluLysLys
 160909 : TTCTGGAAGCTGCTAAGATGATCAAACCACAGACTTTGGCCTCAGAGAAAAAA : 160961

vulgar: SPP00000026_1.0 0 229 . gi|357434097|gb|JH378266.1|:subseq(40982,310961) 149999 160961 + 1138 M 59 177 S 0 1 5 0 2 I 0 2071 3 0 2 S 1 2 M 30 90 5 0 2 I 0 3330 3 0 2 M 47 141 5 0 2 I 0 1328 3 0 2 M 55 165 5 0 2 I 0 3530 3 0 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	gene	150000	160961	1138	+	.	gene_id 1 ; sequence SPP00000026_1.0 ; gene_orientation +
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	cds	150000	150177	.	+	.	
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	exon	150000	150177	.	+	.	insertions 0 ; deletions 0
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice5	150178	150179	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	intron	150178	152252	.	+	.	intron_id 1
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice3	152251	152252	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	cds	152253	152344	.	+	.	
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	exon	152253	152344	.	+	.	insertions 0 ; deletions 0
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice5	152345	152346	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	intron	152345	155678	.	+	.	intron_id 2
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice3	155677	155678	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	cds	155679	155819	.	+	.	
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	exon	155679	155819	.	+	.	insertions 0 ; deletions 0
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice5	155820	155821	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	intron	155820	157151	.	+	.	intron_id 3
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice3	157150	157151	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	cds	157152	157316	.	+	.	
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	exon	157152	157316	.	+	.	insertions 0 ; deletions 0
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice5	157317	157318	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	intron	157317	160850	.	+	.	intron_id 4
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	splice3	160849	160850	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	cds	160851	160961	.	+	.	
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	exon	160851	160961	.	+	.	insertions 0 ; deletions 0
gi|357434097|gb|JH378266.1|:subseq(40982,310961)	exonerate:protein2genome:local	similarity	150000	160961	1138	+	.	alignment_id 1 ; Query SPP00000026_1.0 ; Align 150000 1 177 ; Align 152255 61 90 ; Align 155679 91 141 ; Align 157152 138 165 ; Align 160851 193 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis