Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000026_1.0.fa -t ./exonerate/SPP00000026_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo sapiens # Complete
        Target: gi|357434233|gb|JH378130.1|:subseq(9416559,300582) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00026, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 501
   Query range: 5 -> 229
  Target range: 150661 -> 149999

      6 : AspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaGlyAla-LeuGlyAla :     24
          :!!|||!.!! !|||:!!:!!! !|||||||||||||||.!!||||||#   |||!.!
          AsnProLysCysPheSerValGluMetTrpSerIleGlyThrGlyAla#---GlyGly
 150661 : AACCCAAAGTGCTTCTCTGTGGAGATGTGGTCCATTGGTACAGGAGCCT---GGAGGC : 150609

     25 : AlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSerLysProGlnLysA :     44
          ..!..!|||!.!  !  !  !:!!!:!||||||||||||||||||||||||  !|||!
          CysCysLeuGlyThrAlaAlaSerSerThrAspValPheLeuSerLysProTrpLysG
 150608 : TGCTGCCTTGGTACTGCTGCTTCCAGCACAGATGTATTTTTGTCCAAGCCCTGGAAGG : 150549

     45 : laAlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGluLysGluProArgTh :     63
           !!.!|||||||||||||||:!!! !||||||||||||! !|||||| !!|||  !! 
          luValLeuGluTyrLeuGluAsnThrAspLeuLysThrArgGluLys***ProAlaIl
 150548 : AGGTGCTGGAGTACCTGGAGAACACAGACCTGAAAACACGGGAGAAGTAACCAGCAAT : 150492

     64 : rPheLysAlaLysGluLeuTrp-GluLysAsnGlyAlaValIleMetAlaValArgAr :     82
          !|||||||||||||||||||||#|||||||||||||||||||||:!!|||      ..
          ePheLysAlaLysGluLeuTrp#GluLysAsnGlyAlaValIleValAla------Gl
 150491 : TTTCAAAGCAAAGGAGCTATGGGGAGAAAAATGGAGCTGTGATTGTGGCT------GA : 150440

     83 : gProGlyCysPheLeuCysArgGluGluAlaAlaAspLeuSerSerLeuLysSerMet :    101
          !|||||||||.!!|||!! !:!|||!!:.!!|||||||||! !|||||||||  !! !
          uProGlyCysLeuLeu***GlnGluAspThrAlaAspLeuPheSerLeuLysLeuLys
 150439 : GCCAGGCTGTCTTCTCTGACAAGAAGACACTGCAGACCTGTTCTCCCTGAAACTCAAG : 150383

    102 : LeuAspGlnLeuGlyValProLeuTyrAlaValValLysGluHisIleArgThrGluV :    121
          ||||||:!!|||! ! !!! !||||||.!!||||||!!.|||!!.|||||||||!!::
          LeuAspGluLeuAspPheLeuLeuTyrThrValValAsnGluGlnIleArgThrAspI
 150382 : TTGGACGAGCTGGATTTCCTCCTCTACACAGTGGTTAACGAGCAGATCAGGACAGACA : 150323

    122 : alLysAspPheGlnProTyrPheLysGlyGluIlePheLeuAspGluLysLysLysPh :    140
          !!|||  !|||||||||! !|||||| !!|||||||||||| !!!  !!.|||! !||
          leLysIlePheGlnProCysPheLysArgGluIlePheLeuHisAlaAsnLysThrPh
 150322 : TAAAGATTTTCCAGCCTTGCTTCAAAAGAGAAATCTTCCTGCATGCTAATAAAACGTT : 150266

    141 : eTyrGlyProGlnArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrp :    159
          ||||! !! ! !!|||!:!|||!!::!!||||||||||||! !! !||| !!||||||
          eTyrAspLeu***ArgGlnLysIleLeuPheMetGlyPheSerProLeuArgValTrp
 150265 : CTATGATCTATAAAGACAGAAGATATTGTTTATGGGATTTAGTCCTCTGAGAGTGTGG : 150209

    160 : TyrAsnPhePhe--ArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGl :    178
          ||||||!:!.!!##   |||||||||  !|||! !|||||||||||||||  !..!||
          TyrAsnTyrIle##---AlaTrpAsnGlnGlySerSerGlyAsnLeuGlu***ArgGl
 150208 : TACAACTATATCCA---GCCTGGAATCAAGGCTCCTCTGGAAACCTGGAATAACGAGG : 150153

    179 : yPheIleLeuGlyGlyValPheValValGlySerGlyLysGlnGlyIleLeuLeuGlu :    197
          |||||||||| !!|||||||||  !:!!||||||! !||||||||||||   ||||||
          yPheIleLeuArgGlyValPheSerMetGlySerValLysGlnGlyIle---LeuGlu
 150152 : CTTCATTCTCAGGGGAGTTTTTTCAATGGGATCAGTAAAGCAGGGGATT---CTTGAG : 150099

    198 : HisArgGluLysGluPheGlyAspLysValAsnLeuLeuSerValLeuGluAlaAlaL :    217
          ||| !!|||||||||!:!|||||||||||||||! !|||||||||||||||||||||!
          HisGlyGluLysGluTyrGlyAspLysValAsnSerLeuSerValLeuGluAlaAlaA
 150098 : CACGGAGAAAAAGAATATGGCGACAAAGTAAACTCACTTTCTGTTCTGGAAGCTGCTA : 150039

    218 : ysMetIle-LysProGlnThrLeuAlaSerGluLysLys :    229
          :!! !! !#||||||:!!|||! !|||||||||||||||
          rgLysThr#LysProGluThrSerAlaSerGluLysLys
 150038 : GGAAGACCTAAACCAGAGACTTCAGCCTCAGAGAAAAAA : 150000

vulgar: SPP00000026_1.0 5 229 . gi|357434233|gb|JH378130.1|:subseq(9416559,300582) 150661 149999 - 501 M 16 48 F 0 1 G 1 0 M 48 144 F 0 1 M 9 27 G 2 0 M 82 246 F 0 2 G 1 0 M 30 90 G 1 0 M 24 72 F 0 1 M 10 30
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434233|gb|JH378130.1|:subseq(9416559,300582)	exonerate:protein2genome:local	gene	150000	150661	501	-	.	gene_id 1 ; sequence SPP00000026_1.0 ; gene_orientation .
gi|357434233|gb|JH378130.1|:subseq(9416559,300582)	exonerate:protein2genome:local	cds	150000	150661	.	-	.	
gi|357434233|gb|JH378130.1|:subseq(9416559,300582)	exonerate:protein2genome:local	exon	150000	150661	.	-	.	insertions 0 ; deletions 5 ; frameshifts 5
gi|357434233|gb|JH378130.1|:subseq(9416559,300582)	exonerate:protein2genome:local	similarity	150000	150661	501	-	.	alignment_id 1 ; Query SPP00000026_1.0 ; Align 150662 6 48 ; Align 150613 23 144 ; Align 150468 71 27 ; Align 150441 82 246 ; Align 150193 165 90 ; Align 150103 196 72 ; Align 150030 220 30
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis