Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000025_1.0.fa -t ./exonerate/SPP00000025_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo sapiens # Complete
        Target: gi|357434246|gb|JH378117.1|:subseq(24467380,318416) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00013, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 763
   Query range: 0 -> 154
  Target range: 168416 -> 149999

      1 : MetArgLeuLeuLeuLeuLeuLeuValAlaAlaSerAlaMetValArgSerGluAlaS :     20
          |||||||||||||||||||||||||||||||||||||||:!!||||||||||||||||
          MetArgLeuLeuLeuLeuLeuLeuValAlaAlaSerAlaValValArgSerGluAlaS
 168416 : ATGAGGCTTCTGCTGCTTCTCCTGGTGGCGGCGTCGGCGGTGGTCCGGAGCGAGGCCT : 168359

     21 : erAlaAsnLeuGlyGlyValProSerLysArgLeuLysMetGlnTyrAlaThrGlyPr :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erAlaAsnLeuGlyGlyValProSerLysArgLeuLysMetGlnTyrAlaThrGlyPr
 168358 : CGGCCAACCTGGGCGGTGTGCCCAGCAAGAGATTAAAGATGCAGTACGCCACGGGGCC : 168302

     40 : oLeuLeuLysPheGlnIle{Cy}  >>>> Target Intron 1 >>>>  {s}Val :     47
          |||||||||||||||||||{||}           15238 bp          {|}|||
          oLeuLeuLysPheGlnIle{Cy}++                         ++{s}Val
 168301 : GCTGCTCAAGTTCCAGATT{TG}gt.........................ag{T}GTT : 153040

     48 : SerUnkGlyTyrArgArgValPheGluGluTyrMetArgValIleSerGlnArgTyrP :     67
          |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
          Ser***GlyTyrArgArgValPheGluGluTyrMetArgValIleSerGlnArgTyrP
 153039 : TCCTGAGGTTATAGGCGGGTATTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTACC : 152980

     68 : roAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr{Ar}  >>>>  :     83
          |||||||||||||||||||||||||||||||||||||||||||||||{||}       
          roAspIleArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr{Ar}++     
 152979 : CAGACATCCGCATAGAAGGAGAGAATTACCTCCCTCAACCAATATAT{AG}gt..... : 152928

     84 : Target Intron 2 >>>>  {g}HisIleAlaSerPheLeuSerValPheLysLeu :     94
               541 bp           {|}|||||||||||||||||||||||||||||||||
                              ++{g}HisIleAlaSerPheLeuSerValPheLysLeu
 152927 : ....................ag{A}CACATAGCATCTTTCCTGTCAGTCTTCAAACTA : 152358

     95 : ValLeuIleGlyLeuIleIleValGlyLysAspProPheAlaPhePheGlyMetGlnA :    114
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValLeuIleGlyLeuIleIleValGlyLysAspProPheAlaPhePheGlyMetGlnA
 152357 : GTATTAATAGGCTTAATAATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGCATGCAAG : 152298

    115 : laProSerIleTrpGlnTrpGlyGlnGluAsnLys  >>>> Target Intron 3  :    126
          |||||||||||||||||||||||||||||||||||           2176 bp     
          laProSerIleTrpGlnTrpGlyGlnGluAsnLys++                     
 152297 : CTCCTAGCATCTGGCAGTGGGGCCAAGAAAATAAGgt..................... : 152260

    127 : >>>>  ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnC :    143
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
              ++ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnC
 152259 : ....agGTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAGAACCAGT : 150035

    144 : ysMetSerThrGlyAlaPheGluIleThrLeuAsn :    154
          |||||||||||||||||||||||||||||||||||
          ysMetSerThrGlyAlaPheGluIleThrLeuAsn
 150034 : GTATGTCAACAGGTGCATTTGAGATAACTTTAAAT : 150000

vulgar: SPP00000025_1.0 0 154 . gi|357434246|gb|JH378117.1|:subseq(24467380,318416) 168416 149999 - 763 M 45 135 S 0 2 5 0 2 I 0 15234 3 0 2 S 1 1 M 36 108 S 0 2 5 0 2 I 0 537 3 0 2 S 1 1 M 42 126 5 0 2 I 0 2172 3 0 2 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	gene	150000	168416	763	-	.	gene_id 1 ; sequence SPP00000025_1.0 ; gene_orientation +
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	cds	168280	168416	.	-	.	
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	exon	168280	168416	.	-	.	insertions 0 ; deletions 0
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	splice5	168278	168279	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	intron	153042	168279	.	-	.	intron_id 1
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	splice3	153042	153043	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	cds	152931	153041	.	-	.	
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	exon	152931	153041	.	-	.	insertions 0 ; deletions 0
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	splice5	152929	152930	.	-	.	intron_id 2 ; splice_site "GT"
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	intron	152390	152930	.	-	.	intron_id 2
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	splice3	152390	152391	.	-	.	intron_id 1 ; splice_site "AG"
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	cds	152263	152389	.	-	.	
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	exon	152263	152389	.	-	.	insertions 0 ; deletions 0
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	splice5	152261	152262	.	-	.	intron_id 3 ; splice_site "GT"
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	intron	150087	152262	.	-	.	intron_id 3
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	splice3	150087	150088	.	-	.	intron_id 2 ; splice_site "AG"
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	cds	150000	150086	.	-	.	
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	exon	150000	150086	.	-	.	insertions 0 ; deletions 0
gi|357434246|gb|JH378117.1|:subseq(24467380,318416)	exonerate:protein2genome:local	similarity	150000	168416	763	-	.	alignment_id 1 ; Query SPP00000025_1.0 ; Align 168417 1 135 ; Align 153041 47 108 ; Align 152389 84 126 ; Align 150087 126 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis