Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000022_1.0.fa -t ./exonerate/SPP00000022_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2 (SelR2) # Homo sapiens # Complete
        Target: gi|357434219|gb|JH378144.1|:subseq(14653179,312921) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00040, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 740
   Query range: 61 -> 198
  Target range: 149999 -> 162921

     62 : CysGluLeuProLeuAlaLysSerGluTrpGlnLysLysLeuThrProGluGlnPheT :     81
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          CysGluLeuProLeuAlaLysSerGluTrpGlnLysLysLeuThrProGluGlnPheT
 150000 : TGTGAGCTGCCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCAGAGCAATTCT : 150057

     82 : yrValThrArgGluLysGlyThrGluPro  >>>> Target Intron 1 >>>>   :     91
          |||||||||||||||||||||||||||||           2913 bp           
          yrValThrArgGluLysGlyThrGluPro++                         ++
 150058 : ACGTCACCAGAGAAAAGGGAACGGAACCGgt.........................ag : 152998

     92 : ProPheSerGlyIleTyrLeuAsnAsnLysGluAlaGlyMetTyrHisCysValCysC :    110
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ProPheSerGlyIleTyrLeuAsnAsnLysGluAlaGlyMetTyrHisCysValCysC
 152999 : CCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTACCACTGCGTATGCT : 153057

    111 : ysAspSerProLeuPhe{Se}  >>>> Target Intron 2 >>>>  {r}SerGl :    118
          |||||||||||||||||{||}           8322 bp           {|}|||||
          ysAspSerProLeuPhe{Se}++                         ++{r}SerGl
 153058 : GTGATAGTCCACTCTTC{AG}gt.........................ag{T}TCTGA : 161403

    119 : uLysLysTyrCysSerGlyThrGlyTrpProSerPheSerGluAlaHisGlyThrSer :    137
          ||||||||||||||||  !|||||||||||||||||||||||||||||||||||||||
          uLysLysTyrCysSerHisThrGlyTrpProSerPheSerGluAlaHisGlyThrSer
 161404 : GAAAAAGTACTGCTCCCACACTGGGTGGCCTTCGTTTTCTGAGGCTCATGGTACATCT : 161460

    138 : GlySerAspGluSerHisThrGlyIleLeuArgArgLeuAspThrSerLeuGlySerA :    157
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlySerAspGluSerHisThrGlyIleLeuArgArgLeuAspThrSerLeuGlySerA
 161461 : GGCTCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGACACCTCGTTGGGATCCG : 161520

    158 : laArgThrGluValValCysLysGln  >>>> Target Intron 3 >>>>  Cys :    166
          ||||||||||||||||||||||||||           1276 bp           |||
          laArgThrGluValValCysLysGln++                         ++Cys
 161521 : CTCGCACAGAGGTCGTCTGCAAGCAGgt.........................agTGT : 162823

    167 : GluAlaHisLeuGlyHisValPheProAspGlyProGlyProAsnGlyGlnArgPheC :    186
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluAlaHisLeuGlyHisValPheProAspGlyProGlyProAsnGlyGlnArgPheC
 162824 : GAAGCTCATCTTGGTCACGTGTTTCCTGATGGACCTGGGCCCAACGGTCAGAGGTTTT : 162883

    187 : ysIleAsnSerValAlaLeuLysPheLysProArgLys :    198
          ||||||||||||||||||||||||||||||||||||||
          ysIleAsnSerValAlaLeuLysPheLysProArgLys
 162884 : GCATCAACAGCGTGGCTCTGAAGTTCAAACCCAGGAAA : 162921

vulgar: SPP00000022_1.0 61 198 . gi|357434219|gb|JH378144.1|:subseq(14653179,312921) 149999 162921 + 740 M 29 87 5 0 2 I 0 2909 3 0 2 M 25 75 S 0 2 5 0 2 I 0 8318 3 0 2 S 1 1 M 49 147 5 0 2 I 0 1272 3 0 2 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	gene	150000	162921	740	+	.	gene_id 1 ; sequence SPP00000022_1.0 ; gene_orientation +
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	cds	150000	150086	.	+	.	
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	exon	150000	150086	.	+	.	insertions 0 ; deletions 0
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	splice5	150087	150088	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	intron	150087	152999	.	+	.	intron_id 1
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	splice3	152998	152999	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	cds	153000	153076	.	+	.	
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	exon	153000	153076	.	+	.	insertions 0 ; deletions 0
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	splice5	153077	153078	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	intron	153077	161398	.	+	.	intron_id 2
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	splice3	161397	161398	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	cds	161399	161546	.	+	.	
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	exon	161399	161546	.	+	.	insertions 0 ; deletions 0
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	splice5	161547	161548	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	intron	161547	162822	.	+	.	intron_id 3
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	splice3	162821	162822	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	cds	162823	162921	.	+	.	
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	exon	162823	162921	.	+	.	insertions 0 ; deletions 0
gi|357434219|gb|JH378144.1|:subseq(14653179,312921)	exonerate:protein2genome:local	similarity	150000	162921	740	+	.	alignment_id 1 ; Query SPP00000022_1.0 ; Align 150000 62 87 ; Align 153000 91 75 ; Align 161400 117 147 ; Align 162823 166 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis