Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000017_1.0.fa -t ./exonerate/SPP00000017_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000017_1.0 # Protein # Selenoprotein M (SelM) # Homo sapiens # Complete
        Target: gi|357434157|gb|JH378206.1|:subseq(489126,300429) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00102, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 479
   Query range: 41 -> 145
  Target range: 149152 -> 150429

     42 : ValGluThrCysGlyGlyUnkGlnLeuAsnArgLeuLysGlu  >>>> Target In :     56
          :!!:!!||||||||||||   |||||||||||||||||||||            216 
          LeuGlnThrCysGlyGly***GlnLeuAsnArgLeuLysGlu++              
 149153 : CTCCAGACCTGTGGCGGATGACAGCTGAACCGCCTAAAGGAGgt.............. : 149197

     57 : tron 1 >>>>  ValLysAlaPheValThrGlnAspIleProPhe{Ty}  >>>> T :     67
          bp           |||||||||||||||||||||||||||||||||{||}        
                     ++ValLysAlaPheValThrGlnAspIleProPhe{Ty}++      
 149198 : ...........agGTGAAGGCTTTCGTCACTCAGGACATTCCATTC{TA}gt...... : 149448

     68 : arget Intron 2 >>>>  {r}HisAsnLeuValMetLysHisLeuProGlyAlaA :     79
              670 bp           {|}||||||||||||||||||||||||||||||||||
                             ++{r}HisAsnLeuValMetLysHisLeuProGlyAlaA
 149449 : ...................ag{C}CACAACCTGGTGATGAAACACCTCCCCGGGGCCG : 150150

     80 : spProGluLeuValLeuLeuGlyArgArgTyrGluGluLeuGlu  >>>> Target  :     94
          |||||||||||||||||||||||||||||:!!||||||||||||            79
          spProGluLeuValLeuLeuGlyArgArgHisGluGluLeuGlu++            
 150151 : ACCCCGAGCTCGTGCTGCTGGGCCGCCGCCACGAGGAACTGGAGgt............ : 150197

     95 : Intron 3 >>>>  ArgIleProLeuSerGluMetThrArgGluGluIleAsnAlaL :    108
           bp            |||||||||||||||||||||||||||! !|||||||||||||
                       ++ArgIleProLeuSerGluMetThrArgAlaGluIleAsnAlaL
 150198 : .............agCGCATTCCGCTCAGCGAAATGACCCGCGCAGAGATCAACGCGC : 150316

    109 : euValGlnGluLeuGlyPheTyrArgLysAlaAlaProAspAlaGlnValProProGl :    127
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euValGlnGluLeuGlyPheTyrArgLysAlaAlaProAspAlaGlnValProProGl
 150317 : TGGTGCAGGAGCTCGGCTTCTACCGCAAGGCGGCGCCCGACGCGCAGGTGCCCCCCGA : 150373

    128 : uTyrValTrpAlaProAlaLysProProGluGluThrSerAspHisAlaAspLeu :    145
          ||||||||||||||||:!!!:!|||||||||! !|||||||||||||||||||||
          uTyrValTrpAlaProSerArgProProGluGlyThrSerAspHisAlaAspLeu
 150374 : GTACGTGTGGGCGCCCTCTAGGCCCCCGGAGGGAACTTCGGACCACGCTGACCTG : 150429

vulgar: SPP00000017_1.0 41 145 . gi|357434157|gb|JH378206.1|:subseq(489126,300429) 149152 150429 + 479 M 14 42 5 0 2 I 0 212 3 0 2 M 11 33 S 0 2 5 0 2 I 0 666 3 0 2 S 1 1 M 26 78 5 0 2 I 0 75 3 0 2 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	gene	149153	150429	479	+	.	gene_id 1 ; sequence SPP00000017_1.0 ; gene_orientation +
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	cds	149153	149194	.	+	.	
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	exon	149153	149194	.	+	.	insertions 0 ; deletions 0
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	splice5	149195	149196	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	intron	149195	149410	.	+	.	intron_id 1
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	splice3	149409	149410	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	cds	149411	149445	.	+	.	
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	exon	149411	149445	.	+	.	insertions 0 ; deletions 0
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	splice5	149446	149447	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	intron	149446	150115	.	+	.	intron_id 2
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	splice3	150114	150115	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	cds	150116	150194	.	+	.	
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	exon	150116	150194	.	+	.	insertions 0 ; deletions 0
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	splice5	150195	150196	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	intron	150195	150273	.	+	.	intron_id 3
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	splice3	150272	150273	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	cds	150274	150429	.	+	.	
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	exon	150274	150429	.	+	.	insertions 0 ; deletions 0
gi|357434157|gb|JH378206.1|:subseq(489126,300429)	exonerate:protein2genome:local	similarity	149153	150429	479	+	.	alignment_id 1 ; Query SPP00000017_1.0 ; Align 149153 42 42 ; Align 149411 56 33 ; Align 150117 68 78 ; Align 150274 94 156
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis