Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_8_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434209|gb|JH378154.1|:subseq(11106887,300183) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00050, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 254
   Query range: 1 -> 67
  Target range: 150183 -> 149984

      2 : ValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgLeuS :     21
          ||||||:!! !!||||||||||||||||||||| !!||||||||||||||||||||||
          ValTyrLeuProAsnGlyGlnValLeuAspSerTrpSerGlnSerProTrpArgLeuS
 150183 : GTTTACCTCCCAAATGGACAAGTGTTGGACAGCTGGAGTCAGTCTCCATGGAGATTAT : 150126

     22 : erLeuIleThrAspPhePheTrpGlyIleAlaGluPheVal-ValLeuPhePheLysT :     40
          ||! !|||||||||||||||||| !!|||||||||||||||#:!!|||.!!!!.||||
          erTrpIleThrAspPhePheTrpArgIleAlaGluPheVal#IleLeuLeuLeuLysT
 150125 : CTTGGATAACGGATTTCTTCTGGAGAATAGCTGAGTTTGTGGATTTTGCTTTTGAAAA : 150068

     41 : hrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSerAr :     59
          |||||||||||!:!||||||||||||!!!!!!||||||||||||||||||||||||||
          hrLeuLeuGlnArgAspValLysLysSerSerSerTyrGlyAsnSerSerAspSerAr
 150067 : CTCTGCTTCAGCGAGATGTGAAAAAAAGCAGCAGCTATGGAAACTCATCTGATTCCAG : 150011

     60 : gTyrAspAspGlyArgGlyProPro :     67
          ||||||||||! !||||||||||||
          gTyrAspAspGluArgGlyProPro
 150010 : ATATGATGATGAAAGAGGGCCACCA : 149985

vulgar: SPP00000016_1.0 1 67 . gi|357434209|gb|JH378154.1|:subseq(11106887,300183) 150183 149984 - 254 M 33 99 F 0 1 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434209|gb|JH378154.1|:subseq(11106887,300183)	exonerate:protein2genome:local	gene	149985	150183	254	-	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation .
gi|357434209|gb|JH378154.1|:subseq(11106887,300183)	exonerate:protein2genome:local	cds	149985	150183	.	-	.	
gi|357434209|gb|JH378154.1|:subseq(11106887,300183)	exonerate:protein2genome:local	exon	149985	150183	.	-	.	insertions 0 ; deletions 0 ; frameshifts 1
gi|357434209|gb|JH378154.1|:subseq(11106887,300183)	exonerate:protein2genome:local	similarity	149985	150183	254	-	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150184 2 99 ; Align 150084 35 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis