Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_7_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434155|gb|JH378208.1|:subseq(1444221,300200) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00104, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 272
   Query range: 9 -> 94
  Target range: 150209 -> 149957

     10 : LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpG :     29
          :!!!  ..!!:!|||..!||||||! !!:!||||||||||||||||||||||||!!  
          ValGlyGluGlnSerSerSerPro***LysLeuSerLeuIleThrAspPhePhe***A
 150209 : GTTGGAGAGCAGAGTTCATCTCCATAGAAATTATCTTTGATAACAGATTTCTTCTGAA : 150152

     30 : lyIleAlaGluPheValValLeuPhePheLysThrLeuLeuGlnGlnAspValLysLy :     48
          !!||||||:!!|||||||||||||||!!.|||||||||||||||||| !!||||||||
          rgIleAlaLysPheValValLeuPheLeuLysThrLeuLeuGlnGlnHisValLysLy
 150151 : GAATAGCCAAGTTTGTGGTTTTGTTTTTGAAAACTCTGCTTCAGCAACATGTGAAAAA : 150095

     49 : sArgArgSerTyrGlyAsnSerSerAspSerArgTyrAspAspGlyArgGlyProPro :     67
          |   |||.!!!! ! !||||||||||||||||||||||||:!!|||||| !!||||||
          s---ArgGly***GluAsnSerSerAspSerArgTyrAspAsnGlyArgTrpProPro
 150094 : A---AGAGGCTAAGAAAACTCATCTGATTCCAGATATGATAACGGAAGATGGCCACCA : 150041

     68 : GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProP :     87
          |||!:!|||||| !!!:!!  |||!:!|||!:!||||||!.!||||||||||||||||
          GlySerProProGlyLysThrGlyGlnIleSerHisLeuHisGlyProSerProProP
 150040 : GGAAGCCCTCCAGGAAAAACAGGTCAAATCAGTCATCTTCATGGCCCCAGTCCTCCTC : 149981

     88 : roMetAlaGlyGlyUnkGlyArg :     94
          ||! !|||||||||   ||||||
          roLysAlaGlyGly***GlyArg
 149980 : CGAAGGCTGGTGGATGAGGAAGG : 149958

vulgar: SPP00000016_1.0 9 94 . gi|357434155|gb|JH378208.1|:subseq(1444221,300200) 150209 149957 - 272 M 39 117 G 1 0 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434155|gb|JH378208.1|:subseq(1444221,300200)	exonerate:protein2genome:local	gene	149958	150209	272	-	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation .
gi|357434155|gb|JH378208.1|:subseq(1444221,300200)	exonerate:protein2genome:local	cds	149958	150209	.	-	.	
gi|357434155|gb|JH378208.1|:subseq(1444221,300200)	exonerate:protein2genome:local	exon	149958	150209	.	-	.	insertions 0 ; deletions 1
gi|357434155|gb|JH378208.1|:subseq(1444221,300200)	exonerate:protein2genome:local	similarity	149958	150209	272	-	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150210 10 117 ; Align 150093 50 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis