Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434171|gb|JH378192.1|:subseq(1654632,300239) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00088, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 379
   Query range: 0 -> 94
  Target range: 150239 -> 149957

      1 : MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgL :     20
          !!:..!||||||! !|||! !!!.:!!||||||||||||!:!|||||| !!|||||||
          IleThrTyrIle***AsnGluHisMetLeuAspSerArgAsnGlnSerSerTrpArgL
 150239 : ATCACTTACATCTAGAATGAACACATGCTGGACAGCCGAAATCAGTCTTCATGGAGAT : 150182

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuPhePheLy :     39
          ||! !|||||||||||||||||||||||||||||||||! !|||||||||||||||||
          euPheLeuIleThrAspPhePheTrpGlyIleAlaGluCysValValLeuPhePheLy
 150181 : TATTTTTGATAACAGATTTTTTCTGGGGAATAGCTGAATGTGTGGTTTTATTTTTCAA : 150125

     40 : sThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer :     58
          ||||||||||||||||||||||:!!|||! !!!!||||||||||||||||||||||||
          sThrLeuLeuGlnGlnAspValGluLysIleSerSerTyrGlyAsnSerSerAspSer
 150124 : AACTCTGCTTCAGCAGGATGTAGAAAAAATAAGCAGCTATGGAAACTCATCTGATTCC : 150068

     59 : ArgTyrAspAspGlyArgGlyProProGlyAsnProProArgArgMetGlyArgIleA :     78
           !!||||||! !|||!!!||||||||||||||||||||| !!||||||||||||||||
          GlyTyrAspGlyGlySerGlyProProGlyAsnProPro***ArgMetGlyArgIleA
 150067 : GGATATGATGGTGGAAGTGGGCCACCAGGAAACCCTCCCTGAAGAATGGGTAGAATCA : 150008

     79 : snHisLeuArgGlyProSerProProProMetAlaGlyGlyUnkGlyArg :     94
          ||||||||!.!|||||||||||||||! !||||||||||||   ||||||
          snHisLeuHisGlyProSerProProLeuMetAlaGlyGly***GlyArg
 150007 : ATCATCTGCATGGCCCCAGTCCTCCTCTAATGGCTGGTGGATAAGGAAGG : 149958

vulgar: SPP00000016_1.0 0 94 . gi|357434171|gb|JH378192.1|:subseq(1654632,300239) 150239 149957 - 379 M 94 282
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434171|gb|JH378192.1|:subseq(1654632,300239)	exonerate:protein2genome:local	gene	149958	150239	379	-	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation .
gi|357434171|gb|JH378192.1|:subseq(1654632,300239)	exonerate:protein2genome:local	cds	149958	150239	.	-	.	
gi|357434171|gb|JH378192.1|:subseq(1654632,300239)	exonerate:protein2genome:local	exon	149958	150239	.	-	.	insertions 0 ; deletions 0
gi|357434171|gb|JH378192.1|:subseq(1654632,300239)	exonerate:protein2genome:local	similarity	149958	150239	379	-	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150240 1 282
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis