Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000016_1.0.fa -t ./exonerate/SPP00000016_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete
        Target: gi|357434221|gb|JH378142.1|:subseq(18362071,300191) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00038, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 323
   Query range: 0 -> 88
  Target range: 149999 -> 150268

      1 : MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgL :     20
          ||||||! !||||||||| !!! !||||||||||||||||||||||||||||||||||
          MetValSerIleSerAsn***LeuValLeuAspSerArgSerGlnSerProTrpArgL
 150000 : ATGGTTTCTATCTCCAACTGACTAGTGTTGGACAGCCGGAGTCAGTCTCCATGGAGAT : 150057

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuPhePheLy :     39
          ||||||||||||||:!!||||||||||||||||||||||||||||||! !||||||||
          euSerLeuIleThrAsnPhePheTrpGlyIleAlaGluPheValValSerPhePheLy
 150058 : TATCTTTGATAACAAACTTCTTTTGGGGAATAGCTGAGTTTGTGGTTTCGTTTTTCAA : 150114

     40 : sThrLeuLeuGlnGlnAspVal<-><->LysLysArgArgSerTyrGlyAsnSerSer :     56
          |.!!||||||||||||||||||      ||||||!:!|||||||||||||||||||||
          sAlaLeuLeuGlnGlnAspValLysLysLysLysLysArgSerTyrGlyAsnSerSer
 150115 : AGCTCTGCTTCAGCAAGATGTGAAAAAAAAAAAAAAAAGAAGCTATGGAAACTCATCT : 150171

     57 : AspSerArgTyrAspAspGlyArgGlyProPro--GlyAsnProProArgArgMetGl :     75
          ||||||||||||! !|||||||||     !|||##|||!!.|||||||||||||||! 
          AspSerArgTyrAlaAspGlyArg---GluPro##GlyLysProProArgArgMetAs
 150172 : GATTCCCGATATGCTGATGGAAGA---GAGCCACTGGGAAACCGCCCCGAAGAATGGA : 150227

     76 : yArgIleAsnHisLeuArgGlyProSerProProProMet :     88
          !|||||||||||||||||||||||||||||||||||||||
          pArgIleAsnHisLeuArgGlyProSerProProProMet
 150228 : TAGAATCAATCATCTGCGAGGCCCCAGTCCTCCTCCCATG : 150268

vulgar: SPP00000016_1.0 0 88 . gi|357434221|gb|JH378142.1|:subseq(18362071,300191) 149999 150268 + 323 M 46 138 G 0 6 M 18 54 G 1 0 M 2 6 F 0 2 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434221|gb|JH378142.1|:subseq(18362071,300191)	exonerate:protein2genome:local	gene	150000	150268	323	+	.	gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation .
gi|357434221|gb|JH378142.1|:subseq(18362071,300191)	exonerate:protein2genome:local	cds	150000	150268	.	+	.	
gi|357434221|gb|JH378142.1|:subseq(18362071,300191)	exonerate:protein2genome:local	exon	150000	150268	.	+	.	insertions 6 ; deletions 1 ; frameshifts 2
gi|357434221|gb|JH378142.1|:subseq(18362071,300191)	exonerate:protein2genome:local	similarity	150000	150268	323	+	.	alignment_id 1 ; Query SPP00000016_1.0 ; Align 150000 1 138 ; Align 150144 47 54 ; Align 150198 66 6 ; Align 150206 68 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis