Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000015_1.0.fa -t ./exonerate/SPP00000015_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens # Complete
        Target: gi|357434202|gb|JH378161.1|:subseq(7127516,300140) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00057, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 198
   Query range: 6 -> 132
  Target range: 138541 -> 150140

      7 : ValSerProGluGlnLeuAlaGlyPheAspLysTyrLysTyrSerAlaValAspThrA :     26
          :!!|||  !.!.||||||  ! !!.!.!!::!!:!!!:!|||..!::!!.!!    !:
          LeuSerArgHisGlnLeuLysArgLeuGluGluHisArgTyrGlnSerAlaGlyArgS
 138542 : TTGTCAAGACACCAACTAAAGCGGCTAGAAGAACACAGATATCAAAGTGCTGGACGGT : 138599

     27 : snProLeuSerLeuTyrValMetHisProPheTrpAsnThrIleValLysValPhePr :     45
          :!! !|||..!     !:!!|||!!.  !!:!|||.!.  !:!!|||!:!  ! !!||
          erLeuLeuGlu---ProLeuMetGlnGlyTyrTrpGluTrpLeuValArgArgValPr
 138600 : CCCTGCTTGAG---CCCTTAATGCAAGGGTATTGGGAATGGCTAGTTAGAAGAGTTCC : 138653

     46 : oThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuValValPheAsn :     64
          |:!!|||:!!||||||||||||||||||.!!! !|||.!.! !:!!  !:!!! !!..
          oSerTrpIleAlaProAsnLeuIleThrIleIleGlyLeuSerIleAsnIleCysThr
 138654 : CTCCTGGATTGCCCCAAATCTCATCACCATCATTGGACTGTCAATAAACATCTGTACA : 138710

     65 : PheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSer  >>>> Target In :     79
            !:!!|||:!:!.!!:!!:!  !|||     !   ! !..!           11224
          ThrIleLeuLeuValPheTyrCysProThrAlaThrGluGln++              
 138711 : ACTATTTTATTAGTCTTCTACTGCCCTACAGCTACAGAGCAGgt.............. : 138757

     80 : tron 1 >>>>  AlaProGlyHisLysHisValProAspTrpValTrpIleValVal :     93
           bp          :!!  !  !  !..!!!.!.!|||   |||!.!!::|||!.!  !
                     --SerTyrPheIleSerGlnAlaProLeuTrpAlaTyrIleAlaCys
 138758 : ...........ttTCTTACTTTATTTCACAGGCACCTCTGTGGGCATATATTGCTTGT : 150021

     94 : GlyIleLeuAsnPheValAlaTyrThrLeuAspGlyValAspGlyLysGlnAlaArgA :    113
          !.!  !  !  !|||:!!  ! ! :!!||||||!.!:!!|||||||||||||||||||
          AlaCysGlyLeuPheIleTyrGlnSerLeuAspAlaIleAspGlyLysGlnAlaArgA
 150022 : GCCTGTGGCCTTTTCATTTACCAGTCTTTGGATGCCATTGATGGGAAACAGGCAAGAA : 150081

    114 : rgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSe :    132
          ||||||||||||||:!!|||||||||||||||||||||||||||! !||||||   ||
          rgThrAsnSerSerSerProLeuGlyGluLeuPheAspHisGlyCysAspSerLeuSe
 150082 : GAACCAATAGTAGTTCTCCTCTGGGAGAACTTTTTGATCATGGCTGTGATTCACTATC : 150138

    133 : r :    132
          |
          r
 150139 : A : 150140

vulgar: SPP00000015_1.0 6 132 . gi|357434202|gb|JH378161.1|:subseq(7127516,300140) 138541 150140 + 198 M 23 69 G 1 0 M 48 144 5 0 2 I 0 11220 3 0 2 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	gene	138542	150140	198	+	.	gene_id 1 ; sequence SPP00000015_1.0 ; gene_orientation +
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	cds	138542	138754	.	+	.	
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	exon	138542	138754	.	+	.	insertions 0 ; deletions 1
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	splice5	138755	138756	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	intron	138755	149978	.	+	.	intron_id 1
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	splice3	149977	149978	.	+	.	intron_id 0 ; splice_site "TT"
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	cds	149979	150140	.	+	.	
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	exon	149979	150140	.	+	.	insertions 0 ; deletions 0
gi|357434202|gb|JH378161.1|:subseq(7127516,300140)	exonerate:protein2genome:local	similarity	138542	150140	198	+	.	alignment_id 1 ; Query SPP00000015_1.0 ; Align 138542 7 69 ; Align 138611 31 144 ; Align 149979 79 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis