Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000015_1.0.fa -t ./exonerate/SPP00000015_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens # Complete
        Target: gi|357434111|gb|JH378252.1|:subseq(4045499,321624) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00148, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2011
   Query range: 0 -> 397
  Target range: 184234 -> 149999

      1 : MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLys  :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
          MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLys+
 184234 : ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGg : 184177

     21 :  >>>> Target Intron 1 >>>>  TyrSerAlaValAspThrAsnProLeuSer :     29
                    12556 bp          ||||||||||||||||||||||||||||||
          +                         ++TyrSerAlaValAspThrAsnProLeuSer
 184176 : t.........................agTACAGTGCTGTGGACACCAATCCACTTTCT : 171594

     30 : LeuTyrValMetHisProPheTrpAsnThrIleValLys  >>>> Target Intro :     43
          |||||||||||||||||||||||||||||||||||||||            421 bp 
          LeuTyrValMetHisProPheTrpAsnThrIleValLys++                 
 171593 : CTGTATGTGATGCATCCATTTTGGAACACTATAGTAAAGgt................. : 171550

     44 : n 2 >>>>  ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPhe :     58
                    ||||||||||||||||||||||||||||||||||||||||||||||||
                  ++ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPhe
 171549 : ........agGTATTTCCTACTTGGCTGGCTCCCAATCTGATAACTTTTTCTGGCTTT : 171086

     59 : LeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaS :     78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaS
 171085 : CTGCTGGTCGTATTCAATTTTCTACTAATGGCATACTTTGATCCTGACTTTTATGCCT : 171026

     79 : er{A}  >>>> Target Intron 3 >>>>  {la}ProGlyHisLysHisValPr :     86
          ||{|}           2189 bp           {||}||||||||||||||||||||
          er{A}++                         ++{la}ProGlyHisLysHisValPr
 171025 : CA{G}gt.........................ag{CA}CCGGGTCACAAGCATGTGCC : 168813

     87 : oAspTrpValTrpIleValValGlyIleLeuAsnPheValAlaTyrThrLeu{A}  > :    104
          ||||||||||||||||||||||||||||||||||||||||||||||||||||{|}   
          oAspTrpValTrpIleValValGlyIleLeuAsnPheValAlaTyrThrLeu{A}++ 
 168812 : TGACTGGGTTTGGATTGTGGTGGGCATCCTCAACTTCGTAGCCTACACTCTA{G}gt. : 168756

    105 : >>> Target Intron 4 >>>>  {sp}GlyValAspGlyLysGlnAlaArgArgT :    114
                  3076 bp           {||}||||||||||||||||||||||||||||
                                  ++{sp}GlyValAspGlyLysGlnAlaArgArgT
 168755 : ........................ag{AT}GGTGTAGACGGAAAGCAAGCTCGGAGAA : 165653

    115 : hrAsnSerSerThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCy :    133
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrAsnSerSerThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCy
 165652 : CCAATTCCAGCACTCCCTTAGGGGAGCTTTTTGACCACGGCCTGGATAGTTGGTCATG : 165596

    134 : sValTyrPheValValThrValTyrSerIlePheGlyArgGlySerThrGlyValSer :    152
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sValTyrPheValValThrValTyrSerIlePheGlyArgGlySerThrGlyValSer
 165595 : TGTTTACTTTGTTGTAACTGTGTATTCCATCTTTGGAAGAGGATCAACTGGTGTCAGT : 165539

    153 : ValPheValLeuTyrLeuLeuLeuTrpValValLeuPheSerPheIleLeuSerHisT :    172
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValPheValLeuTyrLeuLeuLeuTrpValValLeuPheSerPheIleLeuSerHisT
 165538 : GTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTTTGTTTTCTTTCATCCTGTCCCATT : 165479

    173 : rpGluLysTyrAsnThrGlyIleLeuPheLeuProTrpGlyTyrAspIleSerGlnVa :    191
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rpGluLysTyrAsnThrGlyIleLeuPheLeuProTrpGlyTyrAspIleSerGlnVa
 165478 : GGGAAAAGTATAACACAGGGATTCTTTTCCTGCCATGGGGATATGACATTAGCCAGGT : 165422

    192 : l  >>>> Target Intron 5 >>>>  ThrIleSerPheValTyrIleValThrA :    201
          |           1324 bp           ||||||||||||||||||||||||||||
          l++                         ++ThrIleSerPheValTyrIleValThrA
 165421 : Ggt.........................agACTATTTCTTTTGTCTACATAGTGACTG : 164068

    202 : laValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLeuTyrArgAs :    220
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLeuTyrArgAs
 164067 : CGGTTGTGGGAGTAGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGA : 164011

    221 : pLeuPheThrAlaMetIleIle{G}  >>>> Target Intron 6 >>>>  {ly} :    228
          ||||||||||.!!|||||||||{|}           8413 bp           {||}
          pLeuPheThrThrMetIleIle{G}++                         ++{ly}
 164010 : CCTATTCACTACAATGATTATT{G}gt.........................ag{GC} : 155573

    229 : CysAlaLeuCysValThrLeuProMetSerLeuLeuAsnPhePhe{Ar}  >>>> Ta :    244
          |||||||||||||||||||||||||||||||||||||||||||||{||}         
          CysAlaLeuCysValThrLeuProMetSerLeuLeuAsnPhePhe{Ar}++       
 155572 : TGTGCATTATGTGTGACTCTTCCAATGAGTTTATTAAACTTTTTC{AG}gt....... : 155522

    245 : rget Intron 7 >>>>  {g}SerTyrLysAsnAsnThrLeuLysLeuAsnSerVa :    256
            1407 bp           {|}||||||||||||||||||||||||! !||||||||
                            ++{g}SerTyrLysAsnAsnThrLeuLysHisAsnSerVa
 155521 : ..................ag{A}AGCTATAAAAATAATACCTTGAAACACAATTCAGT : 154083

    257 : lTyrGluAlaMetValProLeuPheSerProCysLeuLeuPheIleLeuSerThrAla :    275
          ||||||||||:!!||||||!!!||||||||||||||||||||||||||||||||||||
          lTyrGluAlaValValProPhePheSerProCysLeuLeuPheIleLeuSerThrAla
 154082 : CTATGAAGCTGTGGTTCCCTTCTTTTCTCCATGCTTGCTGTTCATTTTGTCTACAGCC : 154026

    276 : TrpIleLeuTrpSerProSerAspIleLeuGluLeuHisProArgValPheTyrPheM :    295
          |||||||||||||||||||||||||||||||||:!!|||||||||:!!||||||||||
          TrpIleLeuTrpSerProSerAspIleLeuGluIleHisProArgIlePheTyrPheM
 154025 : TGGATCCTTTGGTCACCTTCAGATATTTTAGAGATACATCCTAGAATATTCTACTTTA : 153966

    296 : etValGlyThrAlaPheAlaAsnSerThr  >>>> Target Intron 8 >>>>   :    305
          |||||||||||||||||||||||! !|||           1236 bp           
          etValGlyThrAlaPheAlaAsnIleThr++                         ++
 153965 : TGGTTGGAACAGCCTTTGCCAATATCACAgt.........................ag : 152702

    306 : CysGlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuL :    324
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          CysGlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuL
 152701 : TGTCAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTCCAACTTTGAATTGGCTGC : 152643

    325 : euValProLeuPheLeuValValLeuValValAsnLeuGlyValAlaSerTyrValGl :    343
          ||||||||||||||||||||||||||||||||||||||||||||:!!||||||:!!||
          euValProLeuPheLeuValValLeuValValAsnLeuGlyValSerSerTyrIleGl
 152642 : TGGTTCCTCTCTTCTTGGTTGTCTTAGTGGTAAACTTAGGAGTGTCCTCTTACATTGA : 152586

    344 : uSerIleLeuLeuTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGly :    362
          |||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||
          uSerIleIleLeuTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGly
 152585 : GAGCATTATCCTATATACATTAACAACTGCTTTCACTCTGGCCCACATCCATTATGGA : 152529

    363 : ValArgVal  >>>> Target Intron 9 >>>>  ValLysGlnLeuSerSerHi :    372
          |||||||||           2422 bp           ||||||||||||||||||||
          ValArgVal++                         ++ValLysGlnLeuSerSerHi
 152528 : GTACGAGTGgt.........................agGTAAAGCAGCTGAGCAGCCA : 150077

    373 : sPheGlnIleTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyMetGlu :    391
          |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
          sPheGlnIleTyrProPheSerLeuArgLysProAsnSerAsp***LeuGlyMetGlu
 150076 : TTTTCAGATTTACCCCTTCTCATTGAGGAAACCAAACTCAGATTGACTAGGAATGGAA : 150020

    392 : GluLysAsnIleGlyLeu :    397
          ||||||||||||||||||
          GluLysAsnIleGlyLeu
 150019 : GAAAAGAATATTGGCCTG : 150000

vulgar: SPP00000015_1.0 0 397 . gi|357434111|gb|JH378252.1|:subseq(4045499,321624) 184234 149999 - 2011 M 19 57 5 0 2 I 0 12552 3 0 2 M 23 69 5 0 2 I 0 417 3 0 2 M 36 108 S 0 1 5 0 2 I 0 2185 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 3072 3 0 2 S 1 2 M 87 261 5 0 2 I 0 1320 3 0 2 M 36 108 S 0 1 5 0 2 I 0 8409 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1403 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1232 3 0 2 M 61 183 5 0 2 I 0 2418 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	gene	150000	184234	2011	-	.	gene_id 1 ; sequence SPP00000015_1.0 ; gene_orientation +
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	184178	184234	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	184178	184234	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	184176	184177	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	171622	184177	.	-	.	intron_id 1
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	171622	171623	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	171553	171621	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	171553	171621	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	171551	171552	.	-	.	intron_id 2 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	171132	171552	.	-	.	intron_id 2
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	171132	171133	.	-	.	intron_id 1 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	171023	171131	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	171023	171131	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	171021	171022	.	-	.	intron_id 3 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	168834	171022	.	-	.	intron_id 3
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	168834	168835	.	-	.	intron_id 2 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	168759	168833	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	168759	168833	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	168757	168758	.	-	.	intron_id 4 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	165683	168758	.	-	.	intron_id 4
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	165683	165684	.	-	.	intron_id 3 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	165420	165682	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	165420	165682	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	165418	165419	.	-	.	intron_id 5 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	164096	165419	.	-	.	intron_id 5
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	164096	164097	.	-	.	intron_id 4 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	163987	164095	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	163987	164095	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	163985	163986	.	-	.	intron_id 6 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	155574	163986	.	-	.	intron_id 6
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	155574	155575	.	-	.	intron_id 5 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	155525	155573	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	155525	155573	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	155523	155524	.	-	.	intron_id 7 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	154118	155524	.	-	.	intron_id 7
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	154118	154119	.	-	.	intron_id 6 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	153937	154117	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	153937	154117	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	153935	153936	.	-	.	intron_id 8 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	152701	153936	.	-	.	intron_id 8
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	152701	152702	.	-	.	intron_id 7 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	152518	152700	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	152518	152700	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice5	152516	152517	.	-	.	intron_id 9 ; splice_site "GT"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	intron	150096	152517	.	-	.	intron_id 9
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	splice3	150096	150097	.	-	.	intron_id 8 ; splice_site "AG"
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	cds	150000	150095	.	-	.	
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	exon	150000	150095	.	-	.	insertions 0 ; deletions 0
gi|357434111|gb|JH378252.1|:subseq(4045499,321624)	exonerate:protein2genome:local	similarity	150000	184234	2011	-	.	alignment_id 1 ; Query SPP00000015_1.0 ; Align 184235 1 57 ; Align 171622 20 69 ; Align 171132 43 108 ; Align 168832 80 72 ; Align 165681 105 261 ; Align 164096 192 108 ; Align 155572 229 45 ; Align 154117 245 180 ; Align 152701 305 183 ; Align 150096 366 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis