Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000014_1.0.fa -t ./exonerate/SPP00000014_1.0_4_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete
        Target: gi|357434258|gb|JH378105.1|:subseq(51682336,300390) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 521
   Query range: 0 -> 122
  Target range: 149778 -> 150390

      1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAla<->Val---- :     18
          |||||| !!|||||||||||||||||||||||||||||||||||||||   ..!####
          MetAlaSerArgGlyArgLysArgLysAlaGluAlaAlaValValAlaThrThr####
 149779 : ATGGCTTCCCGCGGGAGGAAGCGGAAGGCTGAGGCCGCGGTGGTCGCCACGACCGAGA : 149834

     19 : AlaGluLysArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValV :     37
          ::!||||||||||||||||||||||||||||||||||||:!!||||||||||||:!!|
          SerGluLysArgGluLysLeuAlaAsnGlyGlyGluGlyValGluGluAlaThrIleV
 149835 : AGCGAGAAGCGAGAGAAGCTGGCGAACGGCGGGGAAGGAGTGGAGGAGGCGACCATTG : 149894

     38 : alIleGluHis{Cy}  >>>> Target Intron 1 >>>>  {s}ThrSerUnkAr :     45
          |||||||||||{||}            91 bp            {|}||||||   ||
          alIleGluHis{Cy}++                         ++{s}ThrSer***Ar
 149895 : TTATTGAGCAT{TG}gt.........................ag{C}ACTAGCTGACG : 150009

     46 : gValTyrGlyArgAsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGlu :     64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          gValTyrGlyArgAsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGlu
 150010 : CGTTTATGGGCGAAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCAGAA : 150066

     65 : LeuProValLysValAsnProThrLysProArgArgGlySerPheGluValThrLeuL :     84
          |||||||||||||||||||||.!!||||||||||||||||||||||||||||||||||
          LeuProValLysValAsnProAlaLysProArgArgGlySerPheGluValThrLeuL
 150067 : CTTCCAGTAAAGGTGAACCCAGCCAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGC : 150126

     85 : euArgProAspGlySer{S}  >>>> Target Intron 2 >>>>  {er}AlaGl :     92
          |||||||||||||||||{|}            148 bp           {||}|||||
          euArgProAspGlySer{S}++                         ++{er}AlaGl
 150127 : TGCGCCCGGACGGCAGC{A}gt.........................ag{GT}GCGGA : 150298

     93 : uLeuTrpThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluProGln :    111
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uLeuTrpThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluProGln
 150299 : GCTCTGGACTGGGATTAAGAAGGGGCCCCCGCGCAAACTCAAATTCCCTGAGCCTCAA : 150355

    112 : GluValValGluGluLeuLysLysTyrLeuSer :    122
          |||||||||||||||||||||||||||||||||
          GluValValGluGluLeuLysLysTyrLeuSer
 150356 : GAGGTGGTGGAAGAGTTGAAGAAGTACCTGTCG : 150390

vulgar: SPP00000014_1.0 0 122 . gi|357434258|gb|JH378105.1|:subseq(51682336,300390) 149778 150390 + 521 M 16 48 G 0 3 M 1 3 F 0 4 M 23 69 S 0 2 5 0 2 I 0 87 3 0 2 S 1 1 M 48 144 S 0 1 5 0 2 I 0 144 3 0 2 S 1 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	gene	149779	150390	521	+	.	gene_id 1 ; sequence SPP00000014_1.0 ; gene_orientation +
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	cds	149779	149907	.	+	.	
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	exon	149779	149907	.	+	.	insertions 3 ; deletions 0 ; frameshifts 4
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	splice5	149908	149909	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	intron	149908	149998	.	+	.	intron_id 1
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	splice3	149997	149998	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	cds	149999	150144	.	+	.	
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	exon	149999	150144	.	+	.	insertions 0 ; deletions 0
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	splice5	150145	150146	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	intron	150145	150292	.	+	.	intron_id 2
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	splice3	150291	150292	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	cds	150293	150390	.	+	.	
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	exon	150293	150390	.	+	.	insertions 0 ; deletions 0
gi|357434258|gb|JH378105.1|:subseq(51682336,300390)	exonerate:protein2genome:local	similarity	149779	150390	521	+	.	alignment_id 1 ; Query SPP00000014_1.0 ; Align 149779 1 48 ; Align 149830 17 3 ; Align 149837 18 69 ; Align 150000 42 144 ; Align 150295 91 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis