Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000011_1.0.fa -t ./exonerate/SPP00000011_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) # Homo sapiens # Complete
        Target: gi|357434243|gb|JH378120.1|:subseq(17257600,303825) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1021
   Query range: 0 -> 209
  Target range: 153825 -> 149999

      1 : MetGluProLeuAlaAlaTyrProLeuLysCysSerGlyProArgAlaLysValPheA :     20
          ||||||||||||||||||||||||||||||! !|||||||||||||||||||||||||
          MetGluProLeuAlaAlaTyrProLeuLysTyrSerGlyProArgAlaLysValPheA
 153825 : ATGGAGCCTCTTGCAGCTTACCCGCTAAAATATTCCGGGCCCAGAGCAAAGGTATTTG : 153768

     21 : laValLeuLeuSerIleValLeuCysThrValThrLeuPheLeuLeuGlnLeuLysPh :     39
          ||||||||||||||!!:|||||||||||||||||||||!!.|||||||||||||||||
          laValLeuLeuSerMetValLeuCysThrValThrLeuLeuLeuLeuGlnLeuLysPh
 153767 : CAGTTTTGCTGTCTATGGTTCTATGCACAGTAACACTATTGCTTCTACAACTAAAATT : 153711

     40 : eLeuLysProLysIleAsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArg :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eLeuLysProLysIleAsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArg
 153710 : CCTCAAACCTAAAATCAACAGCTTTTATGCGTTTGAAGTGAAGGATGCAAAAGGAAGA : 153654

     59 : ThrValSerLeuGluLysTyrLysGlyLys  >>>> Target Intron 1 >>>>  :     69
           !!|||||||||||||||||||||||||||            600 bp          
          ProValSerLeuGluLysTyrLysGlyLys++                         +
 153653 : CCTGTTTCTCTGGAAAAGTATAAAGGCAAAgt.........................a : 153023

     70 :  ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu :     87
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          +ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu
 153022 : gGTTTCACTAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTA : 152967

     88 : GlyLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheP :    107
          !.!|||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheP
 152966 : GCACTGAAGGAACTGCACAAAGAGTTCGGACCATCCCACTTCAGCGTGCTGGCTTTCC : 152907

    108 : roCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAl :    126
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          roCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAl
 152906 : CGTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCGAGCAAGGAAGTAGAATCTTTTGC : 152850

    127 : aArgLysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySer :    145
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          aArgLysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySer
 152849 : AAGAAAAAACTACGGAGTAACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCT : 152793

    146 : GluGlyGluProAlaPheArgPheLeuVal{A}  >>>> Target Intron 2 >> :    156
          ||||||||||||||||||||||||||||||{|}           2599 bp       
          GluGlyGluProAlaPheArgPheLeuVal{A}++                       
 152792 : GAAGGAGAACCTGCATTTAGATTTCTTGTT{G}gt....................... : 152757

    157 : >>  {sp}SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnPr :    173
              {||}||||||||||||||||||||||||||||||||||||||||||||||||||
            ++{sp}SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnPr
 152756 : ..ag{AT}TCTTCAAAGAAGGAACCAAGGTGGAATTTTTGGAAGTATCTGGTCAACCC : 150110

    174 : oGluGlyGlnValValLysPheTrpLysProGluGluProIleGluValIleArgPro :    192
          |||||||||||||||||||||||||!:!||||||||||||||||||||||||||||||
          oGluGlyGlnValValLysPheTrpArgProGluGluProIleGluValIleArgPro
 150109 : TGAGGGTCAAGTTGTGAAGTTCTGGAGGCCAGAGGAACCCATTGAAGTCATCAGGCCT : 150053

    193 : AspIleAlaAlaLeuValArgGlnValIleIleLysLysLysGluAspLeu :    209
          ||||||||||||||||||||||||:!!||||||!:!|||||||||||||||
          AspIleAlaAlaLeuValArgGlnLeuIleIleArgLysLysGluAspLeu
 150052 : GACATAGCAGCTCTGGTTAGACAACTGATCATAAGAAAGAAAGAGGATCTA : 150000

vulgar: SPP00000011_1.0 0 209 . gi|357434243|gb|JH378120.1|:subseq(17257600,303825) 153825 149999 - 1021 M 68 204 5 0 2 I 0 596 3 0 2 M 87 261 S 0 1 5 0 2 I 0 2595 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	gene	150000	153825	1021	-	.	gene_id 1 ; sequence SPP00000011_1.0 ; gene_orientation +
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	cds	153622	153825	.	-	.	
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	exon	153622	153825	.	-	.	insertions 0 ; deletions 0
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	splice5	153620	153621	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	intron	153022	153621	.	-	.	intron_id 1
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	splice3	153022	153023	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	cds	152760	153021	.	-	.	
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	exon	152760	153021	.	-	.	insertions 0 ; deletions 0
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	splice5	152758	152759	.	-	.	intron_id 2 ; splice_site "GT"
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	intron	150161	152759	.	-	.	intron_id 2
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	splice3	150161	150162	.	-	.	intron_id 1 ; splice_site "AG"
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	cds	150000	150160	.	-	.	
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	exon	150000	150160	.	-	.	insertions 0 ; deletions 0
gi|357434243|gb|JH378120.1|:subseq(17257600,303825)	exonerate:protein2genome:local	similarity	150000	153825	1021	-	.	alignment_id 1 ; Query SPP00000011_1.0 ; Align 153826 1 204 ; Align 153022 69 261 ; Align 150159 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis