Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000010_1.0.fa -t ./exonerate/SPP00000010_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) # Homo sapiens # Complete
        Target: gi|357434150|gb|JH378213.1|:subseq(15028,300580) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 669
   Query range: 45 -> 187
  Target range: 150580 -> 149999

     46 : SerValSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrA :     65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerValSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrA
 150580 : TCGGTGTCCCTAGTGGTGAATGTGGCCAGCGAGTGTGGCTTCACAGATCAGCACTACC : 150523

     66 : rgAlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPh :     84
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgAlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPh
 150522 : GAGCTCTGCAGCAGCTGCAGCGGGACCTGGGTCCCCACCACTTCAACGTGCTCGCCTT : 150466

     85 : eProCysAsnGlnPheGlyGlnGlnGluProAspSerAsnLysGluIleGluSerPhe :    103
          |||||||||||||||||||!!.||||||||||||.!!|||||||||||||||||||||
          eProCysAsnGlnPheGlyHisGlnGluProAspGlyAsnLysGluIleGluSerPhe
 150465 : CCCCTGCAACCAGTTTGGCCATCAGGAGCCTGACGGCAACAAGGAGATTGAGAGCTTT : 150409

    104 : AlaArgArgThrTyrSerValSerPheProMetPheSerLysIleAlaValThrGlyT :    123
          ||||||||||||||||||||||||||||||||||||!!!|||||||||||||||.!!|
          AlaArgArgThrTyrSerValSerPheProMetPheThrLysIleAlaValThrSerT
 150408 : GCCCGCCGCACCTACAGCGTCTCATTCCCCATGTTTACCAAGATTGCAGTCACCAGTA : 150349

    124 : hrGlyAlaHisProAlaPheLysTyrLeuAla{G}  >>>> Target Intron 1  :    134
          ||||||||:!!|||||||||||||||||||||{|}            155 bp     
          hrGlyAlaTyrProAlaPheLysTyrLeuAla{G}+-                     
 150348 : CTGGTGCCTATCCTGCCTTCAAGTACCTGGCC{C}gc..................... : 150313

    135 : >>>>  {ln}ThrSerGlyLysGluProThrTrpAsnPheTrpLysTyrLeuValAla :    150
                {||}|||||||||||||||||||||||||||!!.||||||||||||||||||
              ++{ln}ThrSerGlyLysGluProThrTrpAsnLeuTrpLysTyrLeuValAla
 150312 : ....ag{AG}ACTTCTGGGAAGGAGCCCACCTGGAACTTGTGGAAATACCTTGTAGCC : 150113

    151 : ProAspGlyLysValValGlyAlaTrpAspProThrValSerValGluGluValArgP :    170
          |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
          ProAspGlyLysValValGlyAlaTrpAspProThrValSerValGluGluIleArgP
 150112 : CCAGATGGAAAGGTGGTAGGGGCTTGGGACCCAACCGTGTCCGTGGAGGAGATCAGAC : 150053

    171 : roGlnIleThrAlaLeuValArgLysLeuIleLeuLeuLysArgGluAspLeu :    187
          |||||||||||||||||||||||||||||||||||! !|||||||||||||||
          roGlnIleThrAlaLeuValArgLysLeuIleLeuArgLysArgGluAspLeu
 150052 : CCCAGATCACAGCACTTGTGAGGAAGCTCATCCTACGGAAGCGAGAAGACTTA : 150000

vulgar: SPP00000010_1.0 45 187 . gi|357434150|gb|JH378213.1|:subseq(15028,300580) 150580 149999 - 669 M 88 264 S 0 1 5 0 2 I 0 151 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	gene	150000	150580	669	-	.	gene_id 1 ; sequence SPP00000010_1.0 ; gene_orientation +
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	cds	150316	150580	.	-	.	
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	exon	150316	150580	.	-	.	insertions 0 ; deletions 0
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	splice5	150314	150315	.	-	.	intron_id 1 ; splice_site "GC"
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	intron	150161	150315	.	-	.	intron_id 1
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	splice3	150161	150162	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	cds	150000	150160	.	-	.	
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	exon	150000	150160	.	-	.	insertions 0 ; deletions 0
gi|357434150|gb|JH378213.1|:subseq(15028,300580)	exonerate:protein2genome:local	similarity	150000	150580	669	-	.	alignment_id 1 ; Query SPP00000010_1.0 ; Align 150581 46 264 ; Align 150159 135 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis