Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000008_1.0.fa -t ./exonerate/SPP00000008_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000008_1.0 # Protein # Glutathione peroxidase 5 (GPx5) # Homo sapiens # Complete
        Target: gi|357434034|gb|JH378329.1|:subseq(1,330530) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1043
   Query range: 0 -> 221
  Target range: 113445 -> 105238

      1 : MetThrThrGlnLeuArgValValHisLeuLeuProLeuLeuLeuAlaCysPheValG :     20
          ||||||..!|||||||||!.!|||!.!|||||||||:!!|||||||||||||||||||
          MetThrValGlnLeuArgAlaValArgLeuLeuProValLeuLeuAlaCysPheValG
 113445 : ATGACTGTACAGTTAAGGGCCGTCCGTCTGCTCCCCGTTCTCCTAGCCTGCTTTGTGC : 113388

     21 : lnThrSerProLysGlnGluLysMetLys  >>>> Target Intron 1 >>>>   :     30
          ||.!!||||||||||||   |||||||||           3539 bp           
          lnAlaSerProLysGln---LysMetLys++                         ++
 113387 : AAGCAAGTCCCAAGCAG---AAGATGAAGgt.........................ag : 109824

     31 : MetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleAlaLeuA :     49
          ||||||||||||!:!|||:!!||||||||||||||||||||||||||||||  !||||
          MetAspCysHisArgAspGlnLysGlyThrIleTyrAspTyrGluAlaIleMetLeuA
 109823 : ATGGATTGTCACAGAGATCAAAAAGGCACCATCTATGACTACGAAGCCATCATGCTGA : 109765

     50 : snLysAsnGluTyrValSerPheLysGlnTyrValGlyLysHisIleLeuPheValAs :     68
          |||||!!.||||||||| !!||||||!:!|||||||||||||||:!!|||||||||||
          snLysLysGluTyrValProPheLysArgTyrValGlyLysHisValLeuPheValAs
 109764 : ATAAGAAGGAATATGTTCCCTTCAAGCGGTATGTGGGCAAGCACGTCCTCTTTGTCAA : 109708

     69 : nValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intr :     81
          |||||||||||||||||||||||||||||||||||||{|}           2035 bp
          nValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++                
 109707 : CGTGGCCACCTACTGTGGTCTGACAGCGCAATATCCT{G}gt................ : 109666

     82 : on 2 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLeuValV :     96
                     {||}||||||||||||||||||||||||||||||!:!||||||||||
                   ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyLeuValV
 109665 : .........ag{AA}CTGAATGCACTCCAGGAGGAGCTGAAGCCCTTTGGTCTAGTTG : 107589

     97 : alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIl :    115
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIl
 107588 : TGTTGGGCTTTCCCTGCAACCAGTTTGGAAAGCAAGAACCAGGAGATAACAAGGAGAT : 107532

    116 : eLeuProGlyLeu{Ly}  >>>> Target Intron 3 >>>>  {s}TyrValArg :    123
          |||||||||||||{||}            417 bp           {|}|||||||||
          eLeuProGlyLeu{Ly}++                         ++{s}TyrValArg
 107531 : TCTTCCTGGGCTC{AA}gt.........................ag{G}TATGTCCGT : 107091

    124 : ProGlyGlyGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyG :    143
          |||||||||||||||||||||!:!||||||||||||||||||||||||||||||||||
          ProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyG
 107090 : CCAGGGGGAGGATTTGTACCCAATTTCCAGCTTTTTGAGAAAGGAGATGTGAATGGTG : 107031

    144 : luLysGluGlnLysValPheSerPheLeuLys  >>>> Target Intron 4 >>> :    154
          ||||||||||||||||||||||||||||||||           1556 bp        
          luLysGluGlnLysValPheSerPheLeuLys++                        
 107030 : AAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGgt........................ : 106996

    155 : >  HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpA :    172
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
           ++HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpA
 106995 : .agCACTCCTGTCCTCATCCCTCTGAGATTTTGGGCACATTCAAATCTATATCCTGGG : 105388

    173 : spProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs :    191
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs
 105387 : ACCCTGTCAAAGTCCATGACATCCGTTGGAACTTTGAAAAGTTCCTGGTGGGTCCCGA : 105331

    192 : pGlyIleProValMetArgTrpSerHisArgAlaThrValSerSerValLysThrAsp :    210
          ||||||||||||||||||||||||||||!:!||||||||||||! !||||||.!!|||
          pGlyIleProValMetArgTrpSerHisGlnAlaThrValSerLeuValLysAlaAsp
 105330 : TGGAATCCCTGTCATGCGCTGGTCCCACCAGGCCACAGTCAGCTTAGTCAAGGCAGAC : 105274

    211 : IleLeuAlaTyrLeuLysGlnPheLysThrLys :    221
          |||  !||||||||||||||||||!:!||||||
          IleGluAlaTyrLeuLysGlnPheArgThrLys
 105273 : ATCGAGGCCTACTTGAAGCAATTCAGAACCAAA : 105239

vulgar: SPP00000008_1.0 0 221 . gi|357434034|gb|JH378329.1|:subseq(1,330530) 113445 105238 - 1043 M 25 75 G 1 0 M 3 9 5 0 2 I 0 3535 3 0 2 M 51 153 S 0 1 5 0 2 I 0 2031 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 413 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1552 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	gene	105239	113445	1043	-	.	gene_id 1 ; sequence SPP00000008_1.0 ; gene_orientation +
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	cds	113362	113445	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	exon	113362	113445	.	-	.	insertions 0 ; deletions 1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice5	113360	113361	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	intron	109823	113361	.	-	.	intron_id 1
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice3	109823	109824	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	cds	109669	109822	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	exon	109669	109822	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice5	109667	109668	.	-	.	intron_id 2 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	intron	107634	109668	.	-	.	intron_id 2
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice3	107634	107635	.	-	.	intron_id 1 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	cds	107516	107633	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	exon	107516	107633	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice5	107514	107515	.	-	.	intron_id 3 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	intron	107099	107515	.	-	.	intron_id 3
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice3	107099	107100	.	-	.	intron_id 2 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	cds	106999	107098	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	exon	106999	107098	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice5	106997	106998	.	-	.	intron_id 4 ; splice_site "GT"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	intron	105443	106998	.	-	.	intron_id 4
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	splice3	105443	105444	.	-	.	intron_id 3 ; splice_site "AG"
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	cds	105239	105442	.	-	.	
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	exon	105239	105442	.	-	.	insertions 0 ; deletions 0
gi|357434034|gb|JH378329.1|:subseq(1,330530)	exonerate:protein2genome:local	similarity	105239	113445	1043	-	.	alignment_id 1 ; Query SPP00000008_1.0 ; Align 113446 1 75 ; Align 113371 27 9 ; Align 109823 30 153 ; Align 107632 82 114 ; Align 107098 121 99 ; Align 105443 154 204
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis